A multi-technique approach has been proposed to characterize weathering phases and their relationships with the primary rhyolitic paragenesis at Piloni di Torniella (Tuscany, Italy) hydrothermal kaolin mine. Analyses were carried out on geological samples and on material extracted from the mine for assessment of the ceramic application of the raw material. A multi-technique protocol was applied, involving both bulk techniques (e.g. X-ray powder diffraction) and microanalytical techniques (e.g. petrographic analysis, scanning electron microscopy with energy-dispersive spectrometry and micro-Raman spectroscopy), including imaging applications. Some secondary phases, such as alunite, halloysite and α-cristobalite, were identified and characterized. Highlighting the presence of such phases is important for the mine license holder and traders, who should manage the specific properties of the final commercial mine products for ceramic applications. Furthermore, a better understanding of the alteration mechanism of biotite at the study site was achieved; in fact, where the alteration process is complete, both kaolinite and halloysite have been identified as intergrown phases in biotite pseudomorphs. This suggests the presence of a lower-temperature fluid (<100°C) percolating in some areas of the mine, probably representing a different alteration stage than that which led to the kaolinization.