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Human history, evolution and even our religious and cultural practices have been greatly influenced by plagues of infectious diseases. The Zika virus epidemic in South America has left a generation of children with microcephaly and raised concerns about infections acquired during large international gatherings such as the 2016 Olympic Games in Rio de Janeiro. The year 2014 will be remembered as the year that a highly contagious and deadly viral disease, Ebola, for the first time moved into large urban populations and quickly became a plague of high mortality and affliction. It directly affected three West African nations and their neighbouring countries, while threatening other nations around the globe. The 2014 Darwin College lecture series ‘Plagues’ had been conceived 18 months earlier, based not on a premonition of an Ebola epidemic, but on the inevitability of an outbreak of one of the many emerging and re-emerging infectious diseases from around the world. The ‘Plague’ lecture series and this book transcend the medical aspects of plagues by remaining true to the tradition of the multidisciplinary engagement of a single theme examining plagues of different types as well as those affecting other species in addition to humans. Plagues draws not only from the biological and medical sciences but also a spectrum of diverse fields such as those which infect our digital global network, threaten our financial institutions, and which have even influenced our language and literature. Intentionally, the sequence and the content of the chapters diverge from the platform lectures, which were limited in time and scope, thus now providing the reader with greater depth, detail and a broader conceptual perspective.
Due to an unfortunate coincidence, the ‘Plague’ lecture series was immediately followed by confirmation of the largest outbreak of one of humankind's most feared infections, Ebola. We have therefore most appropriately included a chapter ‘Ebola, the Plague of 2014/15’. This large-scale epidemic engulfed West Africa and threatened International borders. It took more lives than all other recorded Ebola outbreaks before it and dominated international headlines for two years. This contemporary plague began unrecognised with the death of a two-year-old boy in December 2013, a month before the Darwin College lecture series on plagues would start. Tragically, because Ebola was unknown to West Africa it was misdiagnosed until late March 2014.
It is now beyond reasonable doubt that we are the drivers of almost every global problem we face and that every one of these problems is set to grow, as we continue to grow., Can we say that humans constitute a ‘plague’. Well, it turns out that this is not too ridiculous a comparison to make. The term ‘plague’ is thought to originate from the Latin plāga (‘blow’), or what we would now call an ‘infection’ of a host by disease-causing agents. This includes the rapid multiplication of such organisms and their actions on the host, and the reaction of the host to these organisms and the toxins they produce. I argue the analogous case; that we humans are agents who, through our rapid multiplication and our actions, are now starting to have a deleterious impact on our host, our planet. As a consequence, there is now an emerging reaction of our host to us and our actions.
Just over 200 years ago, there were fewer than a billion humans living on Earth. When I was born in 1960, there were three billion. In 2015, the human population has more than doubled to over seven billion people, and the UN projections expect that there will be ten billion humans on earth sometime towards the end of this century. This is if, optimistically, fertility rates continue to decline as they have done over the last fifty years. It is worth mentioning that this fifty-year decline in fertility rate, which many are keen to point out as a counter-claim to the argument that we have a problem, is actually slowing. It is also worth highlighting that if the current fertility rate were to continue unchanged (which the United Nations defines as the ‘constant fertility variant’), the global population at the end of this century would not be ten billion people, but will be twenty-eight billion.
With this in mind, I should point out that the UN population statistics have been systematically revised upwards over the past decade. The ‘peak’ population under the ‘expected scenario’ in 2100 was under ten billion. It is now over 11 billion according to estimates at the time of writing (Figure 8.1).
We associate plagues with epidemic diseases. The Darwin lecture series on Plagues was, by tragic serendipity, unwittingly launched on the eve of an erupting epidemic of humankind's most feared viral disease, Ebola. Little did we know that 2014 would be the start of the most serious single Ebola outbreak of our recorded history. It highlighted how plagues of such severe disease affect individuals in all layers of society, illustrating the frailty of human life with the unraveling of fragile health care systems, basic infrastructure, transportation and trade, leaving national economies on the brink of collapse.
Yet, the word ‘plagues’ has many more meanings. We explored these through the multidisciplinary approach used by the Darwin College Lecture Series, enriched by views of prominent scholars from very different fields. In this book the theme ‘plagues’ is portrayed not only by international experts of infectious diseases (vaccinology, biochemistry and medicine), but also from scholars in digital security, computational science, mathematical biology, ecology, genetics, history, economics, literature and theology. The result is a comprehensive spectrum of essays on plagues, from their impact on humanity to the animal kingdom, all bundled together in this one very unique book. It is another successful culmination of diverse perspectives on one such theme that the Darwin Lectures so uniquely weaves into one intellectually challenging topic.
Throughout history plagues have inflicted misery and suffering on humankind. Traces of these catastrophes are echoed in our literary past and, intriguingly, also encrypted and passed on through generations in our genes. Notably for the future of human population growth, the expansion of our species is challenging and changing the very environment we and other species require for survival on earth. We are also reminded that it may not just be the infectious plagues but also non-infectious ones that will impact this planet's species as this generation ages. The ever-expanding human population and our impact on climate threatens the delicate balance of ecosystems, making us a human plague to this fragile planet. Are plagues the manifestation of nature's checks and balances? This collection is a thought-provoking product of the topics of the 2014 Darwin College Lecture Series delivered by internationally renowned scholars, known not only for their outstanding work and literary talents, but for their ability to communicate the diverse facets and impacts of plagues.
Digital technology is changing at a faster pace than any other part of our world. The development of the integrated circuit started a revolution that eventually led to the development of technologies like packet-switched networks, which were required to create the internet and the worldwide web. It's easy to see how many beneficial things personal computers and the internet have brought us. They have changed not only our communication and the way we entertain ourselves, but also the way we think. Unfortunately, they have also brought us new kinds of risks.
The online world is a reflection of the real world. Just like we have crime in the world, we have crime in the online world as well. The big difference is that distances and country borders do not exist in the online world – we are not safe from an online criminal just because he's living faraway. Today, our world is largely dependent on digital networks, from personal banking to stock markets to military systems.
How real is the risk of a digital Plague?
Very real.
We've already been fighting computer viruses and other types of malware for decades. They have evolved from simple, straightforward attacks to complicated, global outbreaks. In some ways, the evolution of online attacks resembles biological evolution. But the difference is that all computer attacks are created and launched by humans. By looking at examples of key malware attacks through the years, we can see how attacks on our digital world have evolved over time.
The Origins of Computer Viruses
Brain.A is considered to be the first PC virus in history. It was first detected in 1986. Several variants of the virus followed but most of them were fairly harmless. It ran on IBM-PCs and compatibles with PC-DOS operation systems. Brain was a boot sector virus, infecting the first sector of floppy discs as they were inserted into an infected computer. Brain was only a few kilobytes in size. Before Brain infected diskettes, it looked for a ‘signature’. This made it possible to ‘inoculate’ against the virus by putting the signature in the correct place of the boot sector of a clean floppy. Such floppies would not get infected even if they were inserted into an infected computer. The Brain virus tried to hide from detection by hooking the operating system functions that were used to read the floppy drive.
A broad chronological overview of the plagues of the past and the present provides a basis for understanding how they have arisen, how they have affected societies over time, and how humanity has responded to the challenge of each new wave of deadly disease. Many puzzles still surround the plagues of antiquity, although recent techniques such as DNA analysis of skeletal remains are beginning to provide clues as to their causes; it has, for example, now been confirmed that the plague bacillus, Yersinia pestis, was responsible for the ‘Black Death’ of the mid-14th century. Many other infectious diseases or ‘plagues’, such as smallpox, typhus, cholera and influenza, have afflicted human populations over the centuries. As the causes of these diseases have become increasingly well understood, humanity has devised ever more effective means for their control. With the extension of human lifespan that has resulted from such progress, other medical conditions have become increasingly common, notably the neurological disorder, Alzheimer's disease. Although not infectious, this disease has become so prevalent in recent years that it is has been called a ‘21st century plague’. The intrinsic origins of this highly debilitating condition are now being explored intensively by scientists from many different disciplines leading, as with the plagues of the past, to new ideas as to potential strategies for its prevention and treatment.
Most people associate the word ‘plague’ with the ‘Black Death’ of the mid-fourteenth century, which in the space of a few years killed between a third and a half of the population of Europe, Asia and the Middle East – with frightening consequences. However, throughout history there have been many other widespread and devastating outbreaks of disease that have been labelled as plagues. The word ‘plague’ comes from the Latin plaga, meaning a stroke or a wound; the Oxford English Dictionary also defines it as an affliction, calamity or a general name for any malignant diseases ‘with which men or beasts are stricken’. The word is, moreover, now becoming associated with some disorders that are not infectious, but which have increased in prevalence so rapidly that they have been likened to the historic plagues.
One such condition in humans is dementia, which has been called the ‘twenty-first century plague’, and indeed it is perhaps as greatly feared today as the classic plagues were in the past.
The outbreak of Ebola in West Africa was an unprecedented epidemic of a highly fatal infection. Unexpectedly, after 12 months it was still raging, taking more than two years to control. It threatened international borders, dominated headlines and evoked fear around the globe. A contagious viral disease that causes a fatal haemorrhagic fever, Ebola is publicly perceived as having the capacity to cause a ‘Plague’ of catastrophic consequences. Plagues historically have not discriminated; they have afflicted humans of all levels of society, having both immediate and long-term consequences. The aftermath has had significant influences on public health, medicine, education, communication, societal practices, national economies, as well as cultural and religious beliefs.
The 2014/2015 outbreak was the largest epidemic caused by a Filovirus such as Ebola, since Zaire ebolavirus was first identified in the 1970s. Having infected over 28,000 persons in West Africa it was slow to be recognised and contained. Unfortunately, resolving this epidemic was difficult and protracted, taking two years because of the unexpected appearance of late cases, some without links to someone with clinical disease. This created apprehension in the countries of Guinea, Sierra Leone and Liberia; nations which were economically and socially anxious that the epidemic was officially declared over.
This was a plague of modern times and revealed a number of unexpected outcomes. It changed paradigms not only in our understanding of this disease but also how new vaccines, medicines and diagnostic technologies could be fast-tracked, and changed how international responses to global infectious disease threats could be handled better in the future. This epidemic impacted on the small village communities as well as large urban centres. It changed practices and local perceptions of infectious diseases, re-established the critical importance of basic health infrastructure and highlighted the crippling impact that such gripping infectious diseases have on the struggling economies of developing countries.
Ebola: The Most Feared Contagion
In central Africa Ebola viruses are known to periodically strike remote villages, causing a terrifying haemorrhagic fever with high mortality. Unexpectedly in December 2013, at a distance of 3000 km west of the known heartland of Ebola in Central Africa, an outbreak of a mysterious disease began to spread, extracting a terrifying toll and killing many.
The rush of whole genome sequences spurred by the human genome project has heralded a new way to explore unknown events in our pre-history. Using gene sequences from the genome we are able to mine the vast amount of genetic information coming out of genome sequences from humans and animal species. Certain genetic patterns or ‘footprints’ allow us to deduce ancient defining events in the natural history of a species. Just as early palaeontologists dug up the fossil remains of extinct species, ‘genetic archaeologists’ are beginning to reconstruct the origins of genomic patterns and to link them to ancient demographic events. Modern diseases that clog wards in the world's hospitals represent a major challenge to human health. Historically, such diseases were a selective regulator on a species, the genetically strong individuals survived an infectious disease outbreak and the weak perished. Those that survived passed on the good, beneficial genes to their descendants who later had the right genetics that gave their immune systems an advantage the next time the same type of disease came along. Past interactions between pathogens which had genes that allowed them to quickly adapt finely tuned ever-evolving immune defences that we and other species have developed to protect us from pathogenic organisms. This represents a biological puzzlement that is only beginning to be deciphered. Here, I illustrate how we learn of the acquired, hidden lessons of survival, adaptation and genome evolution by examining natural history from within the genomes of animals and humans. In so doing, we are able to provide an early glimpse of the coming discipline of genomic archaeology. I will illustrate this with examples from ‘The Plague’ (Yesinia pestis, the cause of the black death), SARS and HIV/AIDS. Furthermore, I will describe how scientists have been able to track the emergence and progression of deadly outbreaks, sometimes revealing unfathomed threats to the very existence of a population or the whole species. Examples will include how this new science is able to unlock medical secrets that someday may be used to prevent the extinction of a species.
Infectious diseases, genomes and the arms race
The delicate balance between host species and their pathogens is akin to a deadly arms race, waged fiercely every day multiplied by individuals and populations in different geographical settings. These events are to a different extent recapitulated over the approximately 62,000 species of vertebrates that survive on earth today.
Throughout history many plagues have struck mankind. For nearly as long, mankind has endeavoured to fight the diseases underlying plagues. This chapter highlights the importance of integrating academic disciplines to sustain the considerable progress that we have made in the control of infectious diseases. It is also a personal reflection, which comes with a health warning. Out of necessity it is selective and not comprehensive.
Scientific discoveries have changed the field of infectious diseases rapidly. New technologies constantly impact on the approaches that can be brought to bear on the problem. However, the study of the prevention of infectious diseases is not just about the biology underlying disease, but also about understanding society and individual behaviour. Ultimately, this is the conclusion I wish to deliver: the issues raised by our attempts to prevent plagues affect every member of society, not just the few fascinated by pathogens or our response to them.
Plagues’ Impact on Society
Most appropriately, the start of my analysis is 1347 and The Plague, known as the Black Death, that hit Europe. The historical details of The Plague are discussed in the preceding chapter ‘Plagues and History’ by Mary and Christopher Dobson. However, the importance of The Plague in Europe was that it was the first well-documented large-scale population pandemic. It affected everybody and spread to all parts of Europe, but leaving certain geographical pockets less affected than others.
To examine how to prevent the spread and impact of pathogens, it is important to consider the impact of The Plague on medieval society. Pieter Bruegel in his masterpiece The triumph of death (c.1562) depicts every conceivable grisly way of ending your life in medieval times. From scaffolds to being tortured on the wheel, a variety of ways of being decapitated or having other gruesome injuries inflicted on you are all there. But if this reflects the mind of medieval man, right in the centre is The Plague, with the characteristic plague cart filled with bodies.
So here is a perception of how plague affects individuals and in particular medieval man. Despite the fact that life was short and very hard by today's standards, the plague was perceived as a terrifying terminal event.
How did medieval man respond to this fearsome event? There were three possible options:
The first instinct, if you could afford it and the feudal system allowed it, was to run.
‘Civilization both in East and West was visited by a destructive plague that devastated nations and caused populations to vanish’, the Arab traveller and philosopher Ibn Khaldûn wrote in 1377. ‘It swallowed up many of the good things of civilization and wiped them out.’
Ibn Khaldûn lived through the Black Death that had begun ravaging the Middle East in 1346, and clearly knew what he was talking about. By 1377, the plague had killed between one-third and one-half of the people in China, the Middle East and Europe (although it seems scarcely to have touched Japan, Southeast Asia, India, sub-Saharan Africa or the Americas). ‘As far as can be found in written records’, the Florentine chronicler Matteo Villani concluded, ‘there has been no more widespread judgment by mortal illness from the universal Deluge to the present, nor one that embraced more of the universe, than the one that has occurred in our own day’.
And yet, nearly seven centuries later, humanity has not just survived the Black Death; it has positively flourished in its wake. There are now roughly seventeen times as many of us on the planet as there were in 1346. Each of us, on average, lives roughly twice as long as our fourteenth-century ancestors and produces, on average, fifteen times as much wealth per year. We live in an age of abundance that would have seemed like a magical kingdom to the people who endured the Black Death.
Any lecture series on plagues would need to ask how and why this happened, and when the Master and Fellows of Darwin College invited me to come back to Cambridge and suggest some answers, I jumped at the chance. Ernest Gellner's Darwin Lecture on the origins of society, delivered in the very first series (back in 1986), permanently changed the way I think about the past, and I could not possibly turn down this extraordinary honour. That said, the invitation was also intimidating, not least because the way I like to look at such big questions – through the lens of long-term history – has hardly been very prominent in previous Darwin Lectures. On reflection, however, that seemed to me all the more reason to accept.