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This chapter begins with the strong statement that fish do not exist as a true evolutionary group. Of the five traditional “classes” of vertebrates, fishes are the most problematic. The concept “fish” is wildly paraphyletic. In contrast, extant amphibians form a monophyletic clade. Mammals are also a true evolutionary group. In the previous chapter we learned that the former paraphyletic group Reptilia can be fixed by recognizing that birds are reptiles.
But there is no simple fix for fishes. One possible solution is to say that all tetrapods are fishes too. In other words, you and I and frogs and birds would all be fishes. That could work and it does reflect true evolutionary relationships, but it makes the former concept fishes fairly useless. Another solution is to recognize at least six separate lineages as distinct monophyletic groups.
For decades, biologists have assumed that our most distant animal cousins were sponges (Porifera). This seemed to make a lot of sense, because sponges are very different from us and from all other animals. Sponges do not have different types of tissues, such as skin, muscles, and nerves. Their colonies of cells form the colorful but irregular shapes that are common on coral reefs. There is no way to cut a sponge into two equal halves – adult sponges are asymmetrical. Surely animals such as this must be very distantly related to us, no? (Note that for this chapter, I have switched things up to talk about our most distant animal relatives first.)
But beginning around 2010, new data began to emerge suggesting that another group of animals, the comb jellies, might be our most distant animal relatives. Comb jellies, also known as ctenophores (Ctenophora), are aquatic organisms with generally translucent gel-filled bodies.
This chapter develops the second core feature of the MOUDD theory, the whole nervous system model of the neurophysiological basis of phenomenal consciousness. It develops an allied conception of consciousness as involving hyperexperience and different forms and degrees of consciousness.
Helicopter-based shooting using either a .308 semi-automatic rifle or a semi-automatic 12-gauge shotgun is widely used to manage non-native ungulate populations in Australasia, but the animal welfare outcomes of these two firearms have not been robustly compared. We conducted a randomised field study to compare the animal welfare outcomes of helicopter-based shooting of fallow deer (Dama dama) using a shotgun with three types of lead-based shot (Winchester® 00 Buck, 1 Buck or 4 Buck) relative to a .308 rifle with 135-grain lead-based bullets in New South Wales, Australia, in 2023. All deer that were shot at (n = 390) were killed. Time-to-event curves for times from pursuit to first shot, first shot to insensibility, and the sum of these two metrics (‘total time’), were similar among the four ammunition types. The mean number of shots fired per deer was similar across all four ammunition types, but the mean number of wound tracts per deer increased across the four ammunition types with the number of projectiles per cartridge. All deer subjected to post mortem examination had $ \ge $ 1 wound tract or projectile in the thorax. Our study indicates that using a .308 semi-automatic rifle or a 12-gauge semi-automatic shotgun for helicopter-based shooting of non-native deer, when the latter is used at ranges ≤ 30 m, provides similar animal welfare outcomes.
Follicle-stimulating hormone (FSH) must be applied at 12-h intervals over 4–5 days in the traditional cattle superovulation protocol, which still needs to be improved. This research paper evaluated the superovulation results obtained by a traditional protocol or by a single administration of FSH dissolved in MontanideTM ISA-206 VG (MonISA-206). Control cows were superovulated with 10 mL of FSH (500 µg pFSH + 100 µg pLH) from day 7 to day 10 (for 4 days, twice daily i.m. injections, decreasing doses). Cows in the EG10 and EG7.5 groups were injected i.m. with 20 mL (100%, 10 mL + 10 mL) or 15 mL (75%, 7.5 mL + 7.5 mL) of the FSH and MonISA-206 mixture at once on day 7. All cows were inseminated 12 and 24 h after oestrus onset. The cows presented no pathology at the injection sites. Plasma FSH levels differed between the groups, but the interaction between hour and group × time was not different. Superstimulation and embryo quality results were similar between the groups. A single injection of FSH (both 100% and 75% doses) dissolved in MonISA-206 led to adequate plasma FSH levels and similar superovulation results to traditional FSH treatment, and caused no pathology at the injection sites.
This study compared a culture-based protocol in which only cows identified as having intramammary infections due to major pathogens (major IMI) were treated with dry cow antibiotics (DCAT) compared with the current New Zealand somatic cell count (SCC) and mastitis-based algorithm. Healthy multiparous pregnant lactating cattle (n = 1541) were enrolled from three spring-calving New Zealand farms. A composite four-quarter milk sample was collected aseptically prior to the last milking before dry-off. Samples underwent standard culture and a culture using a novel, custom-made agar plate. Enrolled animals were classified as having a major IMI on 1) standard culture; 2) novel culture and 3) having SCC > 150,000 cells/ml at the last herd test and/or clinical mastitis (CM) in the current lactation. The sensitivity and specificity of novel culture and SCC/mastitis history for identifying cows with major IMI (compared with standard culture) were calculated. Cows were then blocked by standard culture results (major, minor or no growth) and randomly allocated to treatment based on either novel culture results (cult-SDCT) or SCC/mastitis history (alg-SDCT). Cows allocated to cult-SDCT whose novel culture result was major pathogen positive or contaminated received DCAT, while for alg-SDCT cows, all cows with either SCC > 150,000 cells/ml at the last herd test or CM in the current lactation received DCAT. The sensitivity (0.80 vs 0.67) and specificity (0.91 vs 0.81) for major IMI prediction were greater for cult-SDCT than alg-SDCT. After accounting for farm, age and dry-off SCC, alg-SDCT cows had marginal mean SCC at first herd test post-calving of 129,000 (95% CI 116–143,000) cells/ml, whereas the equivalent for cult-SDCT cows was 113,000 (95% CI 101–126,000) cells/ml. Compared to alg-SDCT, using cult-SDCT correctly identified a higher proportion of major IMI identified by standard culture and did not result in an increase in post-calving SCC.
This chapter develops the proper modally inflected understanding of the living animals on earth, which are the most plausible examples of entities that enjoy phenomenal consciousness, which is the first core feature of the MOUDD theory. It includes an introduction to the necessary rudiments of neurophysiology.
This chapter sketches the third key component of the MOUDD theory, a modal structuralist explanation of our experience of particular sensory qualia, by an initial focus on color experience. The actual modal structure of our neurophysiology of color vision explains the apparent modal structure of our color qualia.
According to Aristotle and Linnaeus, there were only two “kingdoms” – Plantae and Animalia. In the 1800s, Haeckel carved kingdom “Protista” off of Linnaeus’ Plantae. Kingdoms for Fungi and Bacteria (Monera) were later added. By the time I was in secondary school, I learned a five-kingdom system. The five “kingdoms” that I learned are still frequently used in biology lessons: animals, plants, fungi, protists, and bacteria. But we now know that a five-kingdom story is so simplified as to be misleading, and it tells us very little about the broad tree of life. Back then, in the 1900s, our limited understanding made things seem more simple, but recent DNA sequence data indicate that the groupings are much more complex.
The five-kingdom system was first proposed in 1969. (1) Animalia were multicellular creatures that eat other organisms. (2) Fungi were generally multicellular decomposers that fed by a network of filamentous cells. (3) Plantae included especially the land plants.
Stagnant flooding (SF) is a unique and prolonged flooding condition characterized by standing water levels of 25–50 cm that persist for extended periods, sometimes throughout the entire crop duration. Most Sub1 introgressed rice varieties, while effective against flash flooding, remain susceptible to SF due to restricted shoot elongation. Tolerance to SF in the elite O. sativa genetic pool is very rare. This study represents the first comprehensive evaluation of interspecific pre-breeding populations developed from crosses between the tolerant African rice landrace GERVEX 2674 (Oryza glaberrima) and three sensitive O. sativa elite breeding lines. The populations were assessed under controlled and SF conditions across three seasons in Nigeria. GERVEX 2674 and its better-performing progenies exhibited moderate elongation and a higher number of tillers under SF, resulting in higher grain yield and plant survival under SF stress. Moderate elongation and high tillering ability were identified as key adaptive traits for maintaining higher productivity under SF. QTL analysis revealed 20 quantitative trait loci (QTLs) across nine chromosomes, with minor effects associated with key agronomic traits such as grain yield, survival percentage, days to 50% flowering, plant height, number of panicles and tillers. A key QTL identified for days to 50% flowering qdtf-12 explaining 10.5% of observed phenotypic variation. The best-performing lines from these interspecific pre-breeding populations showed strong promise for further utilization in breeding for improved SF tolerance in O. sativa.
Chimpanzees are not our ancestors! Rather, they are our closest living cousins. Approximately 7 mya there was a species of ape in Africa, the common ancestor that you and I share with the chimps. That species was not a chimpanzee – we know that thousands of changes in DNA have occurred in the descendant lineages since that ancestor. And many resulting skeletal and biological changes have occurred in both the human lineage and the chimpanzee lineage since that ancestor.
The idea that humans descended from chimpanzees is one of the most common misconceptions about evolution. The notion that we evolved from chimps fits well with the concept of the ladder of progress. We might think that chimpanzees are more “primitive” than we are, so if evolution were a progression toward more “advanced” forms, then we might think that the other living apes evolved first, and that we evolved from those apes. We might think that chimpanzees and gorillas are older species, and that Homo sapiens is a younger species that evolved more recently.
Imagine looking out on the plains of Africa sometime several hundred thousand years ago. You see a group of people – perhaps a family group with grandparents, parents, adolescents, and younger children. You can sense their connection to you – they are fellow humans and you recognize the key features that we all share today. Perhaps some of them are sharing meat from a gazelle they have killed. Others might be gathering fruit or seeds. The children might be running around chasing one another. Imagine a young woman in that clan, perhaps in her early twenties. She could be a woman that you and I and every other living human can trace our ancestry back to. Such a woman lived in East Africa approximately 150,000 years ago; she is a common ancestor that you and I share, along with every other human currently alive on Earth. We all inherited a key piece of our DNA from her. This is a segment of DNA that you inherited from your mother, and she from her mother, and she from her mother … all the way back to this woman who lived perhaps in present-day Kenya, Tanzania, or Ethiopia. She has been nicknamed “mitochondrial Eve.”
All species on Earth share common ancestry – we are all part of the same family tree. The tree of life is a representation of how all those species are related to one another. All living species on Earth are the product of billions of years of evolution, so all are evolutionary equals in that way. However, we tend to think of life in a hierarchical way. We think there are lower animals and higher animals. We may incorrectly think that species of bacteria are old and primitive, and that humans are recent and advanced. Many news articles about evolution can feed into the perceptions that some species are younger, more advanced, or more evolved. But all of those perceptions are misleading. Each of these present-day species are our evolutionary cousins. All species alive today are the product of the same 3.5 billion years of evolutionary change, each adapting to their own environment. (Note that species are the units of evolution, frequently defined based on the distinctiveness of their appearance and genetics, and often on their ability to interbreed and produce fertile offspring.)
Evolution has produced roughly 2.5 million described extant species, and likely at least 5–10 million more undescribed species. The tree of life conceptually unites all the species and lineages of life on Earth as explored in this book. Our species is just the tip of one tiny branch on the vast tree of life (Figure C.1). We do not stand out “above” other lineages; we are not “evolutionarily superior” to other organisms. Each leaf at the tips of the branches of the tree of life represents evolutionary success. Each extant species on the tree of life has evolved to be well suited to its environment, to its own ecological niche. Furthermore, all life is dependent on other life. That is because we have all coevolved with one another. We are dependent on our cousins, and given our ability to impact so much of the environment, they are dependent on us.