Self-similar fractal tree models are numerically investigated to elucidate the drag coefficient, non-equilibrium dissipation behaviour and various turbulence statistics of fractal trees. For the simulation, a technique based on the lattice Boltzmann method with a cumulant collision term is used. Self-similar fractal tree models for aerodynamic computations are constructed using parametric L-system rules. Computations across a range of tree-height-based Reynolds numbers $Re_H$, from 2500 to 120 000, are performed using multiple tree models. As per the findings, the drag coefficients ($C_D$) of these models match closely with those of the previous literature at high Reynolds numbers ($Re_H \geqslant 60\,000$). A normalization process that collapses the turbulence intensity across various tree models is formulated. For a single tree model, a consistent centreline turbulence intensity trend is maintained in the wake region beyond a Reynolds number of 60 000. The global and local isotropy analysis of the turbulence generated by fractal trees indicates that, at high Reynolds numbers ($Re_H \geqslant 60\,000$), the distant wake can be considered nearly locally isotropic. The numerical results confirm the non-equilibrium dissipation behaviour demonstrated in previous studies involving space-filling fractal square grids. The non-dimensional dissipation rate $C_\epsilon$ does not remain constant; instead, it becomes approximately inversely proportional to the local Taylor-microscale-based Reynolds number, $C_\epsilon \propto 1/Re_\lambda$. We find significant one-point inhomogeneity, production and transverse transport of turbulent kinetic energy within the non-equilibrium dissipation near wake region.

To determine the role of interleukin-5 (IL-5) and eosinophils in protection against Strongyloides ratti, mice treated with anti-IL-5 monoclonal antibody (mAb) were infected with S. ratti larvae. Strongyloides ratti egg numbers in faeces (EPG) in mAb treated mice were higher than those in control mice on days 6 and 7 after inoculation. The numbers of migrating worms in mAb treated mice 36h after inoculation were higher than those observed in control mice. Intestinal worm numbers in mAb treated mice 5 days after inoculation were higher than those in control mice. These results show that eosinophils effectively protected the host against S. ratti infection by mainly the larval stage in primary infections. The involvement of eosinophils in protection against secondary infection was also examined. Before secondary infection, mice were treated with anti-IL-5 mAb and infected with S. ratti. Patent infections were not observed in either mAb treated or control Ab treated mice. The numbers of migrating worms in the head and lungs of mAb treated mice increased to 60% of that in primary infected mice. Intestinal worms were not found in mAb treated mice or in contcrol mice after oral implantation of adult worms. Eosinophils were therefore mainly involved in protection against tissue migrating worms in secondary infections.

Since the exogenous compound tris(hydroxymethyl)aminomethane (Tris) showed a potent chemoattractant activity for Brugia pahangi infective third-stage larvae (L3), it was assumed that, in natural infection to a host, filarial L3 can be expected to recognize an endogenous Tris-related compound. In addition, a few amino acids have been identified as water-soluble attractants for second-stage juveniles of Meloidogyne incognita, a plant parasitic nematode. Therefore, the present study assesses the in vitro chemotactic responses of B. pahangi L3 to Tris-related compounds and amino acids using an agar-plate assay. Among Tris-related compounds, 2-amino-1,3-propanediol (APD) and 2-amino-2-methyl-1,3-propanediol (AMPD) exhibited a potent chemoattractant activity for filarial L3 at a level similar to Tris. Furthermore, arginine (Arg) was identified as a potent attractant for filarial L3 among amino acids. In addition, filarial L3 were attracted to Arg, APD and AMPD in mild alkaline conditions rather than acidic conditions. The chemoattractant activity of the three compounds for filarial L3 was observed in concentrations between 6.3 and 200 mm. This is the first report to demonstrate that Arg, APD and AMPD are potent chemoattractants for B. pahangi L3. Endogenous Arg and APD, in particular, may be involved in the regulation of the chemotactic behaviour of filarial L3 in the infection to a host. The present results will help to elucidate the mechanism of filarial skin-penetrating invasion of a host.

To characterise the dissemination patterns of uropathogenic Escherichia coli (UPEC) in a community, we conducted a study utilising molecular and fundamental descriptive epidemiology. The subjects, consisted of women having community-acquired acute urinary tract infection (UTI), were enrolled in the study from 2011 to 2012. UPEC isolates were subjected to antibacterial-susceptibility testing, O serogrouping, phylotyping, multilocus-sequence typing with phylogenetic-tree analysis and pulsed-field-gel electrophoresis (PFGE). From the 209 unique positive urinary samples 166 UPEC were isolated, of which 129 were fully susceptible to the tested antibiotics. Of the 53 sequence types (STs), the four most prevalent STs (ST95, ST131, ST73 and ST357) accounted for 60% of all UPEC strains. Antimicrobial resistance was less frequently observed for ST95 and ST73 than for the others. A majority of rare STs and a few common STs constituted the diversity pattern within the population structure, which was composed of the two phylogenetically distinct clades. Eleven genetically closely related groups were determined by PFGE, which accounted for 42 of the 166 UPEC isolates, without overt geo-temporal clustering. Our results indicate that a few major lineages of UPEC, selected by unidentified factors, are disseminated in this community and contribute to a large fraction of acute UTIs.

Studies of the subsurface microbiology of the Äspö Hard Rock Laboratory, Sweden have revealed the presence of many different bacteria in the deep groundwaters which appear to maintain reducing conditions. Experiments were conducted to study the rock-water and microbial interactions. These used crushed Äspö diorite, Äspö groundwater and iron- and sulphate-reducing bacteria in flowing systems under anaerobic conditions. In column experiments, there was evidence of loss and mobilization of fine-grained crushed material (<5 μm) which had originally adhered to grain surfaces in the starting material. The mobilized fines were trapped between grains. The degree of mineralogical alteration was greater in the experiments when bacteria were present. In both column and continuously stirred reactor experiments, there is evidence for the formation of a secondary clay. These experiments have shown that microbial activity can influence rock-water interactions even in nutrient-poor conditions.

The significance of the potential impacts of microbial activity on the transport properties of host rocks for geological repositories is an area of active research. Most recent work has focused on granitic environments. This paper describes pilot studies investigating changes in transport properties that are produced by microbial activity in sedimentary rock environments in northern Japan. For the first time, these short experiments (39 days maximum) have shown that the denitrifying bacteria, Pseudomonas denitrificans, can survive and thrive when injected into flow-through column experiments containing fractured diatomaceous mudstone and synthetic groundwater under pressurized conditions. Although there were few significant changes in the fluid chemistry, changes in the permeability of the biotic column, which can be explained by the observed biofilm formation, were quantitatively monitored. These same methodologies could also be adapted to obtain information from cores originating from a variety of geological environments including oil reservoirs, aquifers and toxic waste disposal sites to provide an understanding of the impact of microbial activity on the transport of a range of solutes, such as groundwater contaminants and gases (e.g. injected carbon dioxide).

This is the final report on the nomenclature of pyroxenes by the Subcommittee on Pyroxenes established by the Commission on New Minerals and Mineral Names of the International Mineralogical Association. The recommendations of the Subcommittee as put forward in this report have been formally accepted by the Commission. Accepted and widely used names have been chemically defined, by combining new and conventional methods, to agree as far as possible with the consensus of present use. Twenty names are formally accepted, among which thirteen are used to represent the end-members of definite chemical compositions. In common binary solid-solution series, species names are given to the two end-members by the ‘50% rule’. Adjectival modifiers for pyroxene mineral names are defined to indicate unusual amounts of chemical constituents. This report includes a list of 105 previously used pyroxene names that have been formally discarded by the Commission.

We previously reported an association between human parechovirus type 3 (HPeV3) and epidemic myalgia with myositis in adults during summers in which an HPeV3 outbreak occurred in children. However, this disease association has not yet been reported elsewhere. We have since continued our surveillance to accumulate data on this disease association and to confirm whether myalgia occurs in children as well as adults. Between June and August 2014, we collected 380 specimens from children with infectious diseases. We also collected clinical specimens from two adult and three paediatric patients suspected of myalgia. We then performed virus isolation and reverse-transcription–PCR using the collected specimens. We detected HPeV3 in 26 children with infectious diseases, which we regarded as indicating an outbreak. We also confirmed HPeV3 infection in all patients suspected of myalgia. In particular the symptoms in two boys, complaining of myalgia and fever, closely matched the criteria for adult myalgia. Based on our findings from 2008, 2011 and 2014, we again urge that clinical consideration be given to the relationship between myalgia and HPeV3 infections during HPeV3 outbreaks in children. Furthermore, our observations from 2014 suggest that epidemic myalgia and myositis occur not only in adults but also in children.

K. Aoki, B. F. Windley, S. Maruyama & S. Omori reply: First, we thank Viete, Oliver & Wilde for their interesting and thought-provoking comments on the timing of the high-pressure granulite facies (HGR) metamorphism recorded in metamorphic rocks at Cairn Leuchan, Scotland, published by Aoki et al. (2013). Based on new metamorphic data of garnetites and garnet-amphibolites at Cairn Leuchan and new zircon U–Pb ages of amphibolitized eclogite at Tomatin, we suggested in our publication that the HGR metamorphism was retrograde after eclogite facies before the c. 470 Ma ‘Barrovian metamorphism’. Viete, Oliver & Wilde however speculate that the HGR metamorphism at Cairn Leuchan may have occurred at c. 1000 Ma, as a result of their new U–Pb zircon age of the Cowhythe Gneiss at Portsoy and from previous studies of the geological structure and geochronology. We are grateful for this opportunity to describe, albeit in a preliminary manner, our new understanding and tectonic model of the Caledonian orogen in Scotland and western Ireland of which the Barrovian metamorphism is a key component. A reply to a comment is not the correct place to propose an entirely new paradigm for such a classic orogen, but we will present our model more fully in a future publication.

The metamorphic P–T conditions and associated relationships of the Barrovian zones near Glen Muick were re-examined by focusing on the petrology and thermodynamics of rocks at Cairn Leuchan, where garnetite lenses and layers occur in surrounding garnet amphibolite in the highest-grade sillimanite zone. The representative mineral assemblages in the garnet-rich lenses and garnet amphibolite are garnet + quartz + clinopyroxene + plagioclase + amphibole ± epidote, and garnet + amphibole + quartz + plagioclase ± clinopyroxene ± epidote, respectively. The chemical compositions of constituent minerals are the same in both garnetite and garnet amphibolite. The metamorphic P–T conditions of these rocks were estimated by thermodynamic calculations. The results show that the rocks underwent high-pressure granulite facies metamorphism at P = c. 1.2–1.4 GPa and T = c. 770–800°C followed by amphibolite facies metamorphism at P = c. 0.5–0.8 GPa and T = c. 580–700°C. Integration of our new results with previously published data suggests that the retrograde P–T trajectory of the highest-grade Barrovian metamorphic rocks marks a temperature decrease during decompression from a crustal depth of the high-pressure granulite facies, which is much deeper than previously considered.

We use LVDSMC (low-variance deviational Monte Carlo) simulations to calculate, under linearized conditions, the second-order temperature jump coefficient for a dilute gas whose temperature is governed by the Poisson equation with a constant forcing term, as in the case of homogeneous volumetric heating. Both the hard-sphere gas and the BGK model of the Boltzmann equation, for which slip/jump coefficients are not functions of temperature, are considered. The temperature jump relation and jump coefficient determined here are closely linked to the general jump relations for time-dependent problems that have yet to be systematically treated in the literature; as a result, they are different from those corresponding to the well-known linear and steady case where the temperature is governed by the homogeneous heat conduction (Laplace) equation.

The transmission of human metapneumovirus (hMPV) among family members is not well understood. We identified 15 families in which multiple members were diagnosed with hMPV infection by real-time PCR in 2008 and 2010. Index patients ranged in age from 2 years to 11 years (median 5 years), and all 15 index cases were children who attended primary school, kindergarten, or nursery school. Contact patients ranged in age from 2 months to 46 years (median 6 years). Excluding five adult cases, contact patients were significantly younger than index patients (P = 0·0389). Of the 12 contact children, seven (58%) were infants who were taken care of at home. The serial interval between the onset of symptoms in an index patient and the onset of symptoms in a contact patient was estimated to be 5 days. These results suggest that the control of school-based outbreaks is important for preventing hMPV infection in infants.

The antibody responses of 194 volunteers were studied for up to 3 years after primary immunization with one, two or three doses of human diploid cell rabies vaccine, administered either in 0·1 ml volumes intradermally (i.d.) or as 1·0 ml intramuscularly (i.m.). Sero-conversion occurred in 95% of subjects after the first injection and in 100% after the second. The highest titres and most durable antibody responses were induced by three injections of vaccine.

Booster doses were administered either by the subcutaneous (s.c.) or i.d. route, after 6, 12 or 24 months to randomly grouped volunteers; these induced responses ≥ 5·0 i.u. per ml in 95% of subjects. The responses were rapid and were neither influenced by the primary regimen nor by the timing and route of the booster dose.

Antibody titres after i.d. immunization were only two-fold lower than those induced by the larger volume of vaccine. The findings suggest that the i.d. route is both effective and economic.

Using mainly the overwintering prepupae of a “ slug caterpiller ”, Cnidocampa flavescens (Walk.), the mechanism for the frost-resistance in insects was investigated.

Though the freezing point of the blood shows the value of about −2°C. the prepupae are very readily supercooled. When cooled below −20°C., however, the insect body suddenly congeals hard. Insects frozen thus, even for a long period of 100 days, usually withstand the solidification of their bodies without any harmful effect upon either the further development or upon the next generation.

Judging from the shape of the freezing curves of the prepupae and the freezing processes of the blood and isolated tissues, it is inferred that the most probable freezing process of the caterpillar is as follows. At first, the blood freezes rapidly, and consequently the grade of supercooling of the tissue cells is very much lessened by the latent heat of fusion of ice. Extra-cellular freezing of the tissue cells then takes place, in which case the properties of the blood as well as some property of the plasmic surface layer of the cells may play an important role in the prevention of the transmission of freezing into the cell. With the advance of the blood freezing, the tissue cells undergo dehydration and contraction; neverthless, they usually withstand such a condition for a long period, provided that the freezing temperature is not too low. Consequently, the so-called anabiotic state of a frozen insect does not necessarily mean the destruction of the cell structure.