Increasing disease outbreaks and declining biodiversity underscore the need for understanding the impact pathogens have on wildlife populations. To understand how zoonoses impact wild animal welfare, we created a severity index. Using signs of disease information from a bacterial zoonotic disease database, we quantified severity of each sign of disease combined with the number of welfare domains and body systems the pathogen impacts to find the severity index value (SIV) of each unique host-pathogen relationship. We then investigated the effects of host-pathogen richness and conservation status against SIV. We found there to be a strong, negative correlation between increasing pathogen richness and SIV. Species of least concern (LC) were not significantly more likely to have higher SIV than species of conservation concern (CC), but CC species did not have a significant decline of SIV with increasing pathogen richness. This study provides an insight into the relationships between pathogen richness and the risk of pathogen infections to wildlife.

Antarctic glaciers have been considered classically uninhabited. However, they constitute an authentic biome and are populated by microorganisms that not only survive in them but also maintain an active metabolism. The South Shetland archipelago is a good study model to observe the diversity and evolution of the microbial populations that inhabit its glaciers. From a geological point of view, this archipelago is of considerable interest due to the intense and relatively recent volcanic eruptions on Deception Island. Additionally, it has been a place of transit for human and animal populations over time. All of these factors have influenced the composition and diversity of the microbial communities inhabiting the glacial ice. Among these microorganisms, a great diversity of bacteria, archaea, viruses and microeukaryotes such as algae and unicellular fungi have been identified thanks to high-throughput technologies. These cold-adapted microorganisms develop molecular mechanisms of adaptation to the extreme environment they inhabit and contribute to global energy cycles through the processing of organic and inorganic compounds. This review summarizes current knowledge on the biodiversity, ecology and molecular mechanisms of adaptation of cold-adapted microorganisms, and it details the specific characteristics of the microbial populations housed in the Antarctic glaciers in the South Shetland archipelago.

This study evaluated the effects of dietary yeast culture (YC) supplementation on rumen microbiota and lactation performance in dairy goats. Twenty mid-lactation dairy goats were selected and divided into two groups: the control (CON) group was fed a basal diet; the YC group was supplemented with 10 g of YC in 1 kg of basal diet. The administration of YC was associated with a significant increase in dry matter intake, milk yield, milk protein yield, and milk lactose yield in dairy goats (P < 0.05). Additionally, serum total protein, albumin, creatinine, glucose, superoxide dismutase, and catalase levels were increased (P < 0.05). Furthermore, there was an increase in rumen pH and NH3-N levels (P < 0.05), while volatile fatty acid levels were observed to decrease (P < 0.05). The study found no significant difference in the α-diversity of bacteria and fungi between the YC and CON groups (P > 0.05). However, 15 bacterial genera and 13 fungal genera were upregulated (P < 0.05), while 4 bacterial genera and 11 fungal genera were downregulated (P < 0.05) in the YC group. The relative abundance of pathogenic fungi Dipodascus and Gibberella decreased (P < 0.05). Correlation analysis revealed that the bacterial genera were not significantly correlated with lactation performance (P > 0.05), whereas fungal genera Dipodascus and Gibberella were significantly (P < 0.05) correlated with lactation performance. In conclusion, the study demonstrated that YC can influence the rumen microbial composition, reduce the abundance of harmful fungi in the rumen, and improve lactation performance in dairy goats, suggesting that the addition of YC to dairy goat diets has good application prospects.

Serogroup epidemiology of invasive meningococcal disease (IMD) is constantly evolving, varying by time and location. Surveillance reports have indicated a rise in meningococcal serogroup Y (MenY) in some regions in recent years. This systematic literature review explores the evolving epidemiology of MenY IMD globally based on review of recent articles and national surveillance reports published between 1 January 2010 and 25 March 2021. Generally, MenY incidence was low (<0.2/100,000) across all ages in most countries. The reported incidence was more frequent among infants, adolescents, and those aged ≥65 years. More than 10% of all IMD cases were MenY in some locations and time periods. Implementation of vaccination evolved over time as the rise in MenY IMD percentage occurred. Cases decreased in countries with quadrivalent vaccine programs (e.g., United Kingdom, the Netherlands, United States, and Australia), whereas the MenY burden increased and made up a large proportion of cases in areas without vaccine programs. Continuous monitoring of epidemiologic changes of IMD is essential to establish MenY burden and for implementation of prevention strategies.

In this comprehensive review, Acidithiobacillus ferrooxidans, an acidophilic bacterium, has been thoroughly examined as a plausible analogue for microbial life in Venus's lower cloud layer. Given its ability to adapt to extreme conditions, including low pH environments and metal-rich settings, Acidithiobacillus ferrooxidans is considered a promising candidate for studying life analogues in Venus's clouds. This article comprehensively analyses the bacterium's distinctive phenotypic and genotypic features, investigating its metabolic pathways, adaptive strategies and potential ecological niche within Venusian cloud ecosystems. After careful consideration of the environmental parameters characterizing Venus, the unidentified UV absorber in its clouds, and the prospects for microbial life, this review underscores the imperative nature of future Venus missions and the pivotal role that Acidithiobacillus ferrooxidans may play in exploring the possible habitability of Venus and advancing astrobiological research.

Iodine (I) is a trace element with health and environmental significance. Iodate (IO3-), iodide (I-) and organic iodine (org-I) are the major species of iodine that exist in the environment. Dissimilatory IO3--reducing bacteria reduce IO3- to I- directly under anoxic conditions via their IO3- reductases that include periplasmic iodate reductase IdrABP1P2, extracellular DMSO reductase DmsEFAB and metal reductase MtrCAB. IdrAB and DmsEFAB reduce IO3- to hypoiodous acid (HIO) and H2O2. The reaction intermediate HIO is proposed to be disproportionated abiotically into I- and IO3- at a ratio of 2:1. The H2O2 is reduced to H2O by IdrP1P2 and MtrCAB as a detoxification mechanism. Additionally, dissimilatory Fe(III)- and sulfate-reducing bacteria reduce IO3- to I- directly via their IO3- reductases and indirectly via the reduction products Fe(II) and sulfide in the presence of Fe(III) and sulfate, respectively. I--oxidizing bacteria oxidize I- to molecular iodine (I2) directly under oxic conditions via their extracellular multicopper iodide oxidases IoxAC. In addition to I2, a variety of org-I compounds are also produced by the I--oxidizing bacteria during I- oxidation. Furthermore, ammonia-oxidizing bacteria oxidize I- to IO3- directly under oxic conditions, probably via their intracellular ammonia-oxidizing enzymes. Many bacteria produce extracellular reactive oxygen species that can oxidize I- to triiodide (I3-). Bacteria also accumulate I- during which I- is oxidized to HIO by their extracellular vanadium iodoperoxidases. The HIO is then transported into the bacterial cells. Finally, bacteria methylate I- to org-I CH3I, probably via their methyltransferases. Thus, bacteria play crucial and versatile roles in the global biogeochemical cycling of iodine via IO3- reduction, I- oxidation and accumulation and org-I formation.

In the present study, we assessed the sponge fauna, sponge-associated, and planktonic prokaryotic communities residing in Burgers' Zoo Ocean aquarium, Arnhem, the Netherlands. The Ocean aquarium consisted of separate displays and life support systems, and included fish-only systems in addition to a large, 750,000 L tank containing a living, tropical coral reef ecosystem. Sponges were observed throughout the aquarium system and were identified as belonging to the genera Chalinula, Chondrilla, Chondrosia, Cinachyrella, Stylissa, Suberites and Tethya. There was a highly significant difference in composition between sponge-associated and planktonic prokaryotic communities. The tanks in which the sponges were sampled appeared to have a secondary structural effect on prokaryotic composition with sponges and water from the same tanks sharing several microorganisms. Both sponge-associated and planktonic prokaryotic communities housed prokaryotic taxa, which were highly similar to microorganisms previously recorded in sponges or coral reef environments, including taxa potentially involved in nitrification, denitrification, sulphur oxidation, and antibiotic biosynthesis. Several abundant microorganisms were only recorded in sponges and these may play a role in maintaining water quality in the aquarium system. Potential pathogens, e.g. related to Photobacterium damselae, and beneficial organisms, e.g. related to Pseudovibrio denitrificans, were also detected. The present study showed that Burgers' Zoo Ocean aquarium housed diverse free-living and host-associated prokaryotic communities. Future research should focus on identifying conditions and microbial communities conducive to a healthy aquarium environment.

The Vestfold Hills are a 400 km2, isolated ice-free oasis in eastern Antarctica featuring large areas with translucent quartz rocks that provide habitat for hypolithic microbial communities underneath. We used high-throughput DNA sequencing of 16S and 18S ribosomal RNA amplicons to characterize bacterial and eukaryotic hypolithic communities across the Vestfold Hills. We found high-level, local heterogeneity in community structure consistent with limited dispersal between hypoliths. Hypolithic communities were dominated by heterotrophic Bacteroidetes (mean bacterial relative read abundance: 56%) as well as Cyanobacteria (35%), with the eukaryote component often dominated by Chlorophyta (43%). Small but significant proportions of the variation in microbial community composition and function were explained by soil salinity (5–7%) and water availability (8–11%), with distinct taxa associated with different salinities and water availabilities. Furthermore, many inferred bacterial metabolic pathways were enriched in hypolithic communities from either dry or high-salinity sites. Vestfold Hills hypolithic habitats are likely to be local refuges for bacterial and eukaryotic diversity. Gradients in soil salinity and water availability across the Vestfold Hills, in addition to the number and diversity of lake types and fjords as potential source populations, may contribute to the observed variation in the extremophile, hypolithic microbial community composition.

Microbial structures in the form of banded zebra patterns have been found as periodic iron-manganese layers in living biomats on the coast of Satsuma-Iwo Jima, a small volcanic island near southern Kyushu, Japan. Electron microscopic observation shows that coccus, fibrous, and bacillus-type bacterial communities construct zebra architecture Fe-Mn layers through biomineralization on and within cells. A living microbial fumarolic ferro-manganese precipitation growing in seawater around an active volcanic island explains one mechanism of banded formation. Biological processes form the elemental zebra pattern, with periodic distribution of bacterial cells with Fe-Mn in each layer of the architecture. Fibrous bacteria are sometimes mineralized with goethite, ferrihydrite, and buserite microcrystals, coated with granular mucoid substances. The biomineralization may then mature to form a recent stratified banded-iron formation. The Satsuma-Iwo Jima zebra architecture is unusual in that it forms under aerobic conditions in a warm shallow-water environment, in contrast to the intermittent oxidizing and reducing conditions in which deep-sea analogues develop.

Microbial reduction of clay mineral structural Fe(III) decreases the swelling of nontronite gels, most importantly at intermediate oxidation states (40 to 80 cmol Fe(II) kg−1 clay). The purpose of this study was to establish whether microbial reduction of structural Fe(III) decreased the swelling of other Fe-bearing smectites and to discern the influence that organic compounds of microbial origin (bacterial cells, cell fragments and/or exudates) may have on clay swelling and texture. Structural Fe(III) was reduced by incubating smectite suspensions with either a combination of Pseudomonas bacteria or a mixture of anaerobic bacteria. The influence of organics on clay swelling was estimated on smectites suspended in either organic or inorganic media in the absence of bacteria. The gravimetric water content of the reduced clay gels equilibrated at various applied pressures was recorded as a function of Fe oxidation state. Transmission electron microscopy (TEM) was employed to determine the influence of bacteria and type of media on the texture of reduced smectite gels. Reduction of structural Fe(III) by bacteria decreased the swelling pressure of all Fe-bearing smectites. Increased clay swelling, due to the presence of organics (organic medium, exudates or cell fragments), was correlated to the total Fe content, the extent of structural Fe reduction, as well as the initial swelling characteristics of the Fe-bearing smectites. High structural Fe(II) contents (>50 cmol Fe(II) kg−1) resulted in increased attractive forces between clay platelets that decreased clay swelling, even in organic medium suspensions. Microbial reduction resulted in increased face-face association of individual clay layers, forming larger and more distinct crystallite subunits than in nonreduced clay gels. But, perhaps more importantly, microbial reduction of structural Fe(III) resulted in an increased association between crystallite subunits and, thus, an overall larger particle size and pore size distribution, due to the interaction of bacteria ceils, cell fragments and organic exudates.

Bacterial mineralization in weathered pyroclastic deposits of the Kaimondake volcanic ash (4040 ybp) and the Koya pyroclastic flow (6400 ybp) was investigated to evaluate the impacts of bacteria on mineral formation, and to characterize the microbiogenic minerals in the weathering environment. The mineralogy of abiogenic weathering products was also investigated for comparison with the microbiogenic products, and mineral saturation indices were calculated for porewaters using the PHREEQC computer code. The results indicated that these weathered pyroclastic deposits contain 108–109 cells/g, consisting of spherical to rod-shaped bacteria. Associated abiogenic allophane had an Al/Si ratio ranging from 1.01 to 2.13. The bacterial cell surfaces were completely or partially covered by poorly-ordered silicate minerals, which could be divided into two groups based on their chemical and morphological characteristics. Group I was characterized by well developed fibrous to smectite-like flaky habits with variable Al, Si and Fe, corresponding to compositions between proto-imogolite allophane and chamosite. These Al-Si-Fe minerals were the most abundant and major microbiogenic products in both lithologies. Group II exhibited poorly-developed aggregates of allophane-like granular materials composed mainly of Al and Si with minor Fe. Geochemical calculations revealed that the porewaters were saturated with respect to allophane and other crystalline clay minerals such as halloysite, kaolinite, montmorillonite and nontronite. These microbiogenic minerals may be formed as the earliest phase of these clay minerals after interaction of the bacterial cell surfaces with dissolved cations mainly Si, Al and Fe, in the porewaters.

Dark Fe oxides and sulfides are major discoloring impurities in mined commercial white kaolin clay. In order to evaluate the potential influence of Fe-cycle bacteria on Fe cycling during post-depositional clay-weathering alteration, Fe(III)-reducing and/or Fe(II)-oxidizing microorganisms were examined in open-pit, subsurface mine samples from kaolin lenses and smectite formations collected from sites in central Georgia. Samples of varying age were examined, including late Eocene smectite overburden, hard kaolin of Middle Eocene age, soft gray kaolin from the late Paleocene, and soft tan kaolin of late Cretaceous age. These clays contained 0.06–5.33% organic carbon, which included various potential organic electron donors for bacterial metabolism: formate (1.1–30.6 mmol/kg), acetate (0–40.5 mmol/kg), lactate (0–12.1 mmol/kg), pyruvate (0.4–78 mmol/kg), oxalate (0–141.7 mmol/kg), and citrate (0–1.4 mmol/kg). All clay samples studied had small concentrations of ‘bio-available’ Fe(III) (0.5 M HCl-extractable Fe, 0.5–2.8 mmol/kg) compared to total Fe (HF-extractable, 25–171.9 mmol/kg). The highest Fe(III)/[Fe(II)+Fe(III)] ratio and the lowest organic carbon content were in kaolin samples in which Fe(III) reduction was determined to be the dominant terminal electron accepting process by hydrogen analysis. All clay samples showed greater numbers of Fe(II)-oxidizing bacteria (22–22,000 cells/g) than Fe(III)-reducing bacteria (3–410 cells/g) as determined by MPN analysis. The Fe(III)-reducing activity in clays could be stimulated with the addition of 1 mM of the Fe(III) chelator, nitrilotriacetic acid. The addition of nitrate stimulated anaerobic Fe(II) oxidation. These results suggest that anaerobic bacteria involved in both oxidation and reduction of Fe exist in these subsurface clay formations, and might have had an influence on post-depositional weathering reactions.

The occurrence of kerolite in association with various secondary Ca-Mg carbonate mineral deposits (speleothems) was identified in basaltic sea caves on the island of Kauai, Hawaii. Kerolite is the dominant clay mineral in the deposits. X-ray diffraction (XRD) peaks of the kerolite are characteristically broadened indicating its extremely poor crystallinity. Few changes were observed in the XRD patterns of this kerolite when it was subjected to various humidity, temperature and ethylene-glycol treatments. The crystals appear as flaky masses with irregular or jagged edges in scanning (SEM) and transmission electron microscopy (TEM). Electron probe and energy dispersive X-ray (EDX) microanalysis show that the clay material is dominated by Mg-Si-O, with minor amounts of Al and Ca in some samples. The chemical composition, thermal analysis and TEM observations suggest that smaller amounts of an amorphous serpentine-like phase are mixed with the kerolite. Kerolite is often the only mineral associated with poorly mineralized, actively-growing microbial mats in these caves and it is common in completely lithified microbial mats. The latter commonly have microstromatolitic structures with kerolite as a dominant phase. These features suggest that kerolite formation is at least in part a result of microbial activity. The abundant extracellular polymers of the mat-forming bacteria bind and concentrate ions (Mg2+, silica) from solution and serve as nucleation sites for kerolite precipitation. Conditions within the mats also probably lead to formation of Mg-Si-gels, amorphous Mg-silicate precursors and ultimately kerolite. Evaporation of the cave solutions may also contribute to kerolite formation.

An associated microbiome of any host helps it in different metabolic processes ranging from the decomposition of food to the maturation of gametes. Organisms with a parasitic mode of life, though present at nutritious sites inside their host, maintain their own microbiome. Nevertheless, the comprehensive characterization and functionality of microbiome in parasitic organisms remain understudied. We selected two nematode parasites of Kashmir Merino sheep viz; Haemonchus contortus and Trichuris ovis based on their higher prevalence, difference in mode of nutrition, habitation site and effect on host. The objective of the study was to explore the bacteria associated with these parasitic nematodes of sheep. We adopted a 16S rRNA metagenomic sequencing approach to estimate and compare the bacterial communities present in these two nematode species. Nematode parasites from Kashmir Merino sheep were identified morphologically and confirmed with DNA characterization. H. contortus was dominated by phylum Proteobacteria (57%), Firmicutes (25%), Bacteroidota (15%) and Actinobacteriota (3%). Conversely, T. ovis showed Proteobacteria (78%) followed by Firmicutes (8%), Bacteroidota (8%), Actinobacteriota (1%), Fusobacteriota (1%) and other phyla (4%). This study provides a comprehensive account of the microbiome composition of H. contortus and T. ovis, both of which are highly prevalent among Kashmir Merino sheep. Additionally, T. ovis exhibited a greater bacterial diversity compared to H. contortus. Notably, these nematodes were found to harbor certain pathogenic bacteria. This study can further be carried forward in gaining insights into the complex relationship between the microbiota of a parasite and its pathogenicity, reproductive potential and host microbiome modification.