To save content items to your account,
please confirm that you agree to abide by our usage policies.
If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account.
Find out more about saving content to .
To save content items to your Kindle, first ensure no-reply@cambridge.org
is added to your Approved Personal Document E-mail List under your Personal Document Settings
on the Manage Your Content and Devices page of your Amazon account. Then enter the ‘name’ part
of your Kindle email address below.
Find out more about saving to your Kindle.
Note you can select to save to either the @free.kindle.com or @kindle.com variations.
‘@free.kindle.com’ emails are free but can only be saved to your device when it is connected to wi-fi.
‘@kindle.com’ emails can be delivered even when you are not connected to wi-fi, but note that service fees apply.
The membrane potential is a critical aspect of cellular physiology, essential for maintaining homeostasis, facilitating signal transduction, and driving various cellular processes. While the resting membrane potential (RMP) represents a key physiological parameter, membrane potential fluctuations, such as depolarization and hyperpolarization, are equally vital in understanding dynamic cellular behavior. Traditional techniques, such as microelectrodes and patch-clamp methods, offer valuable insights but are invasive and less suited for high-throughput applications. Recent advances in voltage indicators, including fast and slow dyes, and novel imaging modalities such as second harmonic generation (SHG) and photoacoustic imaging, enable noninvasive, high-resolution measurement of both RMP and membrane potential dynamics. This review explores the mechanisms, development, and applications of these tools, emphasizing their transformative potential in neuroscience and cellular electrophysiology research.
The Green’s function method is among the most powerful and versatile formalisms in physics, and its nonequilibrium version has proved invaluable in many research fields. With entirely new chapters and updated example problems, the second edition of this popular text continues to provide an ideal introduction to nonequilibrium many-body quantum systems and ultrafast phenomena in modern science. Retaining the unique and self-contained style of the original, this new edition has been thoroughly revised to address interacting systems of fermions and bosons, simplified many-body approaches like the GKBA, the Bloch equations, and the Boltzmann equations, and the connection between Green’s functions and newly developed time-resolved spectroscopy techniques. Small gaps in the theory have been filled, and frequently overlooked subtleties have been systematically highlighted and clarified. With an abundance of illustrative examples, insightful discussions, and modern applications, this book remains the definitive guide for students and researchers alike.
We study the geometric particle-in-cell methods for an electrostatic hybrid plasma model. In this model, ions are described by the fully kinetic equations, electron density is determined by the Boltzmann relation and space-charge effects are incorporated through the Poisson equation. By discretizing the action integral or the Poisson bracket of the hybrid model, we obtain a finite dimensional Hamiltonian system, for which the Hamiltonian splitting methods or the discrete gradient methods can be used to preserve the geometric structure or energy. The global neutrality condition is conserved under suitable boundary conditions. Moreover, the results are further developed for an electromagnetic hybrid model proposed by Vu (J. Comput. Phys., vol. 124, issue 2, 1996, pp. 417–430). Numerical experiments of finite grid instability, Landau damping and resonantly excited nonlinear ion waves illustrate the behaviour of the numerical methods constructed.
Fast electron generation and transport in high-intensity laser–solid interactions induces X-ray emission and drives ion acceleration. Effective production of these sources hinges on an efficient laser absorption into the fast electron population and control of divergence as the beam propagates through the target. Nanowire targets can be employed to increase the laser absorption, but it is not yet clear how the fast electron beam properties are modified. Here we present novel measurements of the emittance of the exiting fast electron beam from irradiated solid planar and nanowire targets via a pepper-pot diagnostic. The measurements indicate a greater fast electron emittance is obtained from nanowire targets. Two-dimensional particle-in-cell simulations support this conclusion, revealing beam defocusing at the wire–substrate boundary, a higher fast electron temperature and transverse oscillatory motion around the wires.
This study employs direct numerical simulations to examine the effects of varying backpressure conditions on the turbulent atomisation of impinging liquid jets. Using the incompressible Navier–Stokes equations, and a volume-of-fluid approach enhanced by adaptive mesh refinement and an isoface-based interface reconstruction algorithm, we analyse spray characteristics in the environments with ambient gas densities ranging from 1 to 40 times the atmospheric pressure under five different backpressure scenarios. We investigate the behaviour of turbulent jets, incorporate realistic orifice geometries and identify significant variations in the atomisation patterns depending on backpressure. Two distinct atomisation types emerge, namely jet-sheet-ligament-droplet at lower backpressures and jet-sheet-fragment-droplet at higher ones, alongside a transition from dilute to dense spray patterns. This variation affects the droplet size distribution and spray dynamics, with increased backpressure reducing the spray's spreading angle and breakup length, while increasing the droplet size variation. Furthermore, these conditions promote distributions that induce rapid, nonlinear wavy motion in liquid sheets. Topological analysis of the atomisation field using velocity-gradient tensor invariants reveals significant variations in topology volume fractions across different regions. Downstream, the droplet Sauter mean diameter increases and then stabilises, reflecting the continuous breakup and coalescence processes, notably under higher backpressures. This research underscores the substantial impact of backpressure on impinging-jet atomisation and provides essential insights for nozzle design to optimise droplet distributions.
We have investigated the dynamics of floating tracer in an idealised turbulent quasi-geostrophic ocean by advecting Lagrangian particles in a high-resolution velocity field enhanced by the potential flow associated with vortex stretching. At first order in the Rossby number expansion, this component of the ageostrophic circulation can be derived through a diagnostic equation in terms of the geostrophic velocities. Borrowing methods from the theory of Lagrangian coherent structures, we identify coherent material loops around strong vortex cores using the Lagrangian averaged vorticity deviation (LAVD). Building on studies of clustering in kinematic, stochastic velocity fields, we utilise methods from statistical topography to show that the coherent vortices dominate the distribution of extreme values of the concentration field. We find that the presence of clusters and voids in a coherent vortex depends on more than just the sense of rotation, but also on the full evolution of the vorticity over its lifecycle. We identify the mechanism behind the cluster formation that respects the symmetries of the quasi-geostrophic equations but can be expected to hold robustly in more complicated regimes, due to the simple physical description. The association of cluster formation with vortex stretching implies that LAVD is a particularly relevant metric for floating tracer dynamics. The detection of intense clustering also has implications for reaction rates between ocean-borne flotsam, meaning that our results are relevant to understanding the general risk of floating microplastics and marine biological populations.
We develop a time-dependent conformal method to study the effect of viscosity on steep surface waves. When the effect of surface tension is included, numerical solutions are found that contain highly oscillatory parasitic capillary ripples. These small-amplitude ripples are associated with the high curvature at the crest of the underlying viscous-gravity wave, and display asymmetry about the wave crest. Previous inviscid studies of steep surface waves have calculated intricate bifurcation structures that appear for small surface tension. We show numerically that viscosity suppresses these. While the discrete solution branches still appear, they collapse to form a single smooth branch in the limit of small surface tension. These solutions are shown to be temporally stable, both to small superharmonic perturbations in a linear stability analysis, and to some larger amplitude perturbations in different initial-value problems. Our work provides a convenient method for the numerical computation and analysis of water waves with viscosity, without evaluating the free-boundary problem for the full Navier–Stokes equations, which becomes increasingly challenging at larger Reynolds numbers.
A new method is developed for suppressing thermally induced wavefront distortions of the radiation in the active element of disk geometry. The method is based on controlling radial temperature gradients in the active element using a profiled heatsink. An active element with a zero thermal lens developed on the basis of numerical simulation was experimentally demonstrated in a disk laser head. Higher-order phase aberrations in the active element with a profiled heatsink were weaker than in the element with a flat heatsink. Using this method, a thermal-lens-free active-mirror ytterbium-doped yttrium aluminum garnet amplifier with an output energy of 54 mJ at an average pump power of 100 W and a repetition rate of 106 Hz was implemented.
Gravito–capillary waves at free surfaces are ubiquitous in several natural and industrial processes involving quiescent liquid pools bounded by cylindrical walls. These waves emanate from the relaxation of initial interface distortions, which often take the form of a cavity (depression) centred on the symmetry axis of the container. The surface waves reflect from the container walls leading to a radially inward propagating wavetrain converging (focussing) onto the symmetry axis. Under the inviscid approximation and for sufficiently shallow cavities, the relaxation is well-described by the linearised potential-flow equations. Naturally, adding viscosity to such a system introduces viscous dissipation that enervates energy and dampens the oscillations at the symmetry axis. However, for viscous liquids and deeper cavities, these equations are qualitatively inaccurate. In this study, we decompose the initial localised interface distortion into several Bessel functions and study their time evolution governing the propagation of concentric gravito–capillary waves on a free surface. This is carried out for inviscid as well as viscous liquids. For a sufficiently deep cavity, the inward focussing of waves results in large interfacial oscillations at the axis, necessitating a second-order nonlinear theory. We demonstrate that this theory effectively models the interfacial behaviour and highlights the crucial role of nonlinearity near the symmetry axis. This is rationalised via demonstration of the contribution of bound wave components to the interface displacement at the symmetry axis Contrary to expectations, the addition of slight viscosity further intensifies the oscillations at the symmetry axis although the mechanism of wavetrain generation here is quite different compared with bubble bursting where such behaviour is well known (Duchemin et al., Phys. Fluids, vol. 14, issue 9, 2002, pp. 3000–3008). This finding underscores the limitations of the potential flow model and suggests avenues for more accurate modelling of such complex free-surface flows.
The GABA type A receptor (GABAAR) belongs to the family of pentameric ligand-gated ion channels and plays a key role in inhibition in adult mammalian brains. Dysfunction of this macromolecule may lead to epilepsy, anxiety disorders, autism, depression, and schizophrenia. GABAAR is also a target for multiple physiologically and clinically relevant modulators, such as benzodiazepines (BDZs), general anesthetics, and neurosteroids. The first GABAAR structure appeared in 2014, but the past years have brought a particularly abundant surge in structural data for these receptors with various ligands and modulators. Although the open conformation remains elusive, this novel information has pushed the structure–function studies to an unprecedented level. Electrophysiology, mutagenesis, photolabeling, and in silico simulations, guided by novel structural information, shed new light on the molecular mechanisms of receptor functioning. The main goal of this review is to present the current knowledge of GABAAR functional and structural properties. The review begins with an outline of the functional and structural studies of GABAAR, accompanied by some methodological considerations, especially biophysical methods, enabling the reader to follow how major breakthroughs in characterizing GABAAR features have been achieved. The main section provides a comprehensive analysis of the functional significance of specific structural elements in GABAARs. We additionally summarize the current knowledge on the binding sites for major GABAAR modulators, referring to the molecular underpinnings of their action. The final chapter of the review moves beyond examining GABAAR as an isolated macromolecule and describes the interactions of the receptor with other proteins in a broader context of inhibitory plasticity. In the final section, we propose a general conclusion that agonist binding to the orthosteric binding sites appears to rely on local interactions, whereas conformational transitions of bound macromolecule (gating) and allosteric modulation seem to reflect more global phenomena involving vast portions of the macromolecule.
The ‘Viroporin’ family comprises a number of mostly small-sized, integral membrane proteins encoded by animal and plant viruses. Despite their sequence and structural diversity, viroporins share a common functional trend: their capacity to assemble transmembrane channels during the replication cycle of the virus. Their selectivity spectrum ranges from low-pH-activated, unidirectional proton transporters, to size-limited permeating pores allowing passive diffusion of metabolites. Through mechanisms not fully understood, expression of viroporins facilitates virion assembly/release from infected cells, and subverts the cell physiology, contributing to cytopathogenicity. Compounds that interact with viroporins and interfere with their membrane-permeabilizing activity in vitro, are known to inhibit virus production. Moreover, viroporin-defective viruses comprise a source of live attenuated vaccines that prevent infection by notorious human and livestock pathogens. This review dives into the origin and evolution of the viroporin concept, summarizes some of the methodologies used to characterize the structure–function relationships of these important virulence factors, and attempts to classify them on biophysical grounds attending to their mechanisms of ion/solute transport across membranes.
Aircraft with bio-inspired flapping wings that are operated in low-density atmospheric environments encounter unique challenges associated with the low density. The low density results in the requirement of high operating velocities of aircraft to generate sufficient lift resulting in significant compressibility effects. Here, we perform numerical simulations to investigate the compressibility effects on the lift generation of a bio-inspired wing during hovering flight using an immersed boundary method. The aim of this study is to develop a scaling law to understand how the lift is influenced by the Reynolds and Mach numbers, and the associated flow physics. Our simulations have identified a critical Mach number of approximately $0.6$ defined by the average wing-tip velocity. When the Mach number is lower than 0.6, compressibility does not have significant effects on the lift or flow fields, while when the Mach number is greater than $0.6$, the lift coefficient decreases linearly with increasing Mach number, due to the drastic change in the pressure on the wing surface caused by unsteady shock waves. Moreover, the decay rate is dependent on the Reynolds number and the angle of attack. Based on these observations, we propose a scaling law for the lift of a hovering flapping wing by considering compressible and viscous effects, with the scaled lift showing excellent collapse.
Models for slow flow of dense granular materials often treat the medium as incompressible, thereby neglecting the role of Reynolds dilatancy. However, recent particle simulations have demonstrated the presence of a significant coupling between the volume fraction and velocity fields. The model of Dsouza & Nott (J. Fluid Mech., vol. 888, 2020, R3) incorporates dilatancy and captures the coupling, but it has thus far lacked experimental validation. In this paper, we provide the first experimental demonstration of dilatancy and its coupling to the kinematics in a two-dimensional cylindrical Couette cell. We find a shear layer near the inner cylinder within which there is significant dilation. Within the shear layer, the azimuthal velocity decays roughly exponentially and the volume fraction rises with radial distance from the inner cylinder. The predictions of the model of Dsouza & Nott (2020) are in good agreement with the experimental data for a variety of roughness features of the outer cylinder. Moreover, by comparing the steady states resulting from different initial volume fraction profiles (but having the same average), we show the inter-dependence of the velocity and volume fraction fields, as predicted by the model. Our results establish the importance of shear dilatancy even in systems of constant volume.
Weak-line T Tauri stars (WTTS) exhibit X-ray flares, likely resulting from magnetic reconnection that heats the stellar plasma to very high temperatures. These flares are difficult to identify through targeted observations. Here, we report the serendipitous detection of the brightest X-ray flaring state of the WTTS KM Ori in the eROSITA DR1 survey. Observations from SRG/eROSITA, Chandra X-ray Observatory, and XMM-Newton are analysed to assess the X-ray properties of KM Ori, thereby establishing its flaring state at the eROSITA epoch. The long-term (1999–2020) X-ray light curve generated for the Chandra observations confirmed that eROSITA captured the source at its highest X-ray flaring state recorded to date. Multi-instrument observations support the X-ray flaring state of the source, with time-averaged X-ray luminosity ($L_\mathrm{0.2-5\ keV}$) reaching $\sim 1.9\times10^{32}\mathrm{{erg\ s^{-1}}}$ at the eROSITA epoch, marking it the brightest and possibly the longest flare observed so far. Such intense X-ray flares have been detected only in a few WTTS. The X-ray spectral analysis unveils the presence of multiple thermal plasma components at all epochs. The notably high luminosity ($L_\mathrm{0.5-8\ keV}\sim10^{32}\ \mathrm{erg\ s}^{-1}$), energy ($E_\mathrm{ 0.5-8\ keV}\sim10^{37}$ erg), and the elevated emission measures of the thermal components in the eROSITA epoch indicate a superflare/megaflare state of KM Ori. Additionally, the H$\alpha$ line equivalent width of $\sim$$-5$ Å from our optical spectral analysis, combined with the lack of infrared excess in the spectral energy distribution, were used to re-confirm the WTTS (thin disc/disc-less) classification of the source. The long-duration flare of KM Ori observed by eROSITA indicates the possibility of a slow-rise top-flat flare. The detection demonstrates the potential of eROSITA to uncover such rare, transient events, thereby providing new insights into the X-ray activity of WTTS.
This investigation explores the potential formation of a relaxed equilibrium state, specifically the quadruple Beltrami state, in a three-component dusty plasma consisting of electrons, ions and negatively charged dust particles. This equilibrium state is derived by employing momentum-balanced equations along with Ampere's law. The quadruple Beltrami state is a composite of four Beltrami states, each associated with four distinct eigenvalues. Using the variational principle, we obtained the same relaxed state based on the system's constraints, which include magnetofluid energy, and the helicity of electrons, ions and dust particles. The unified flow is also derived. Dynamo action is investigated in two configurations: a rectangular geometry and a rectangular geometry with an internal conductor. Small-scale turbulent dynamo behaviour is observed in the former, while large-scale turbulent dynamo effects are noted in the latter. The magnitude of the magnetic field is found to be greater in the configuration with an internal conductor. Additionally, flow profiles are plotted as functions of Beltrami parameters and density variations of plasma species. This study contributes to the understanding of relaxation theory and the underlying physics of systems with an internal conductor, such as Saturn (planetary rings around a magnetosphere) and Jupiter magnetosphere, Uranus, Neptune, etc.
In this study, we investigate the properties of energy thickness $\delta _3$ in turbulent boundary layer (TBL) flows, a parameter derived solely from the mean streamwise velocity ($U$) profile. Through an analysis of the energy integral equation for zero pressure gradient TBLs, we establish a close relationship between turbulent kinetic energy (TKE) production and $\delta _3$, offering a practical method to estimate TKE production, which is particularly useful in physical experiments where direct measurements are challenging. The significance of $\delta _3$ becomes even more pronounced in TBLs under pressure gradient. Through extensive analysis of numerical and experimental data, we show that the ratio between $\delta _3$ and the momentum thickness $\delta _2$ is a promising criterion for predicting flow separation. Moreover, we derive a new energy integral equation for TBLs under arbitrary pressure gradients, and provide approximations for TKE productions terms by $R_{uv}\,\partial U/\partial y$ and $R_{uu}\,\partial U/\partial x$, and dissipation term by the mean shear. Here, $x, y$ represent the streamwise and wall-normal directions, respectively, and $R_{uu}$ and $R_{uv}$ are the Reynolds normal and shear stresses. The accuracy and robustness of the new energy integral equation and the approximation equations are validated using direct numerical simulations data. Our results show that the TKE production by $R_{uv}\,\partial U/\partial y$ and the overall productions consistently remain positive, reflecting a continuous conversion of mean kinetic energy into TKE across all TBLs. However, under strong favourable pressure gradients, TKE production by $R_{uu}\,\partial U/\partial x$ becomes negative, indicating a reverse energy transfer from TKE to mean kinetic energy.
Predicting and perhaps mitigating against rare, extreme events in fluid flows is an important challenge. Due to the time-localised nature of these events, Fourier-based methods prove inefficient in capturing them. Instead, this paper uses wavelet-based methods to understand the underlying patterns in a forced flow over a 2-torus which has intermittent high-energy burst events interrupting an ambient low-energy ‘quiet’ flow. Two wavelet-based methods are examined to predict burst events: (i) a wavelet proper orthogonal decomposition (WPOD) based method which uncovers and utilises the key flow patterns seen in the quiet regions and the bursting episodes; and (ii) a wavelet resolvent analysis (WRA) based method that relies on the forcing structures which amplify the underlying flow patterns. These methods are compared with a straightforward energy tracking approach which acts as a benchmark. Both the wavelet-based approaches succeed in producing better predictions than a simple energy criterion, i.e. earlier prediction times and/or fewer false positives and the WRA-based technique always performs better than WPOD. However, the improvement of WRA over WPOD is not as substantial as anticipated. We conjecture that this is because the mechanism for the bursts in the flow studied is found to be largely modal, associated with the unstable eigenfunction of the Navier–Stokes operator linearised around the mean flow. The WRA approach should deliver much better improvement over the WPOD approach for generically non-modal bursting mechanisms where there is a lag between the imposed forcing and the final response pattern.
Observations of the intracluster medium (ICM) in the outskirts of galaxy clusters reveal shocks associated with gas accretion from the cosmic web. Previous work based on non-radiative cosmological hydrodynamical simulations have defined the shock radius, $r_{\text{shock}}$, using the ICM entropy, $K \propto T/{n_\mathrm{e}}^{2/3}$, where T and $n_{\text{e}}$ are the ICM temperature and electron density, respectively; the $r_{\text{shock}}$ is identified with either the radius at which K is a maximum or at which its logarithmic slope is a minimum. We investigate the relationship between $r_{\text{shock}}$, which is driven by gravitational hydrodynamics and shocks, and the splashback radius, $r_{\text{splash}}$, which is driven by the gravitational dynamics of cluster stars and dark matter and is measured from their mass profile. Using 324 clusters from The Three Hundred project of cosmological galaxy formation simulations, we quantify statistically how $r_{\text{shock}}$ relates to $r_{\text{splash}}$. Depending on our definition, we find that the median $r_{\text{shock}} \simeq 1.38 r_{\text{splash}} (2.58 R_{200})$ when K reaches its maximum and $r_{\text{shock}} \simeq 1.91 r_{\text{splash}} (3.54 R_{200})$ when its logarithmic slope is a minimum; the best-fit linear relation increases as $r_{\text{shock}} \propto 0.65 r_{\text{splash}}$. We find that $r_{\text{shock}}/R_{200}$ and $r_{\text{splash}}/R_{200}$ anti-correlate with virial mass, $M_{200}$, and recent mass accretion history, and $r_{\text{shock}}/r_{\text{splash}}$ tends to be larger for clusters with higher recent accretion rates. We discuss prospects for measuring $r_{\text{shock}}$ observationally and how the relationship between $r_{\text{shock}}$ and $r_{\text{splash}}$ can be used to improve constraints from radio, X-ray, and thermal Sunyaev-Zeldovich surveys that target the interface between the cosmic web and clusters.
The three-dimensional stability of two-dimensional natural convection flows in a heated, square enclosure inclined to the horizontal is investigated numerically. First, the computational procedure is validated by comparison of base flow solutions to results reported in literature across a range of inclinations. A bi-global linear stability analysis is then conducted to investigate the stability of these two-dimensional base flows to infinitesimal three-dimensional perturbations, and the effect that buoyancy forces (defined by a buoyancy number $R_N$) and enclosure inclination $\theta$ have on these stability characteristics. The flow is first observed to become three-dimensionally unstable at buoyancy number $R_N = 213.8$ when $\theta$ is $180^\circ$; this increases to $R_N = 2.54 \times 10^4$ at inclination $\theta =58^\circ$. It is found that the two-dimensional base flow is more unstable to three-dimensional perturbations with the critical $R_N$ corresponding to three-dimensional instability being significantly lower than its two-dimensional counterpart across all considered inclinations except $83^\circ \leq \theta \leq 88^\circ$, where the most unstable mode is a two-dimensional oscillatory mode that develops in the boundary layers along the conducting walls. Eight different leading three-dimensional instability modes are identified, with inclinations $58^\circ \leq \theta < 88^\circ$ transitioning through an oscillatory mode, and inclinations $88^\circ \leq \theta \leq 180^\circ$ transitioning through a stationary mode. The characteristics of the primary instability modes corresponding to inclinations $88^\circ \leq \theta \leq 179^\circ$ indicate the presence of a Taylor–Görtler instability.
Yeast frataxin (Yfh1) is a small natural protein from yeast that has the unusual property of undergoing cold denaturation at temperatures above the freezing point of water when under conditions of low ionic strength. This peculiarity, together with remarkable resilience, allows the determination, for the whole protein as well as for individual residues, of the stability curve, that is the temperature dependence of the free energy difference between the unfolded and folded forms. The ease of measuring stability curves without the need to add denaturants or introduce ad hoc destabilizing mutations makes this protein an ideal ‘tool’ for investigating the influence of many environmental factors on protein stability. The present review aims at recapitulating all the open questions that Yfh1 has helped to address, including understanding the differences and commonalities of the cold, heat and pressure unfolded states. This protein thus offers a unique tool for studying aspects of protein stability so far been considered difficult to assess and provides important guidelines that could allow the identification of other similar systems.