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With the aim of producing a 3D representation of tumors, imaging and molecular annotation of xenografts and tumors (IMAXT) uses a large variety of modalities in order to acquire tumor samples and produce a map of every cell in the tumor and its host environment. With the large volume and variety of data produced in the project, we developed automatic data workflows and analysis pipelines. We introduce a research methodology where scientists connect to a cloud environment to perform analysis close to where data are located, instead of bringing data to their local computers. Here, we present the data and analysis infrastructure, discuss the unique computational challenges and describe the analysis chains developed and deployed to generate molecularly annotated tumor models. Registration is achieved by use of a novel technique involving spherical fiducial marks that are visible in all imaging modalities used within IMAXT. The automatic pipelines are highly optimized and allow to obtain processed datasets several times quicker than current solutions narrowing the gap between data acquisition and scientific exploitation.
Salt marshes occupy the intertidal zone and support rich ecosystems of salt-tolerant plants and other biota (Costanza et al. 1997; Mitsch and Gosselink, 2000). These ecosystems contain channel networks that dissect marsh platforms, just as terrestrial river networks dissect hillslopes. In contrast to upland landscapes, marsh platforms are very low relief, are inundated by tides, and the channels that dissect them experience bidirectional flows (D’Alpaos et al. 2005; Hughes, 2012; Coco et al. 2013). These conditions are also present in intertidal mudflats, yet marsh platforms sit at different elevations (Fagherazzi et al. 2006), have different characteristics of their channel networks (Rinaldo et al. 1999a, 1999b; Kleinhans et al. 2009), and different hydrodynamics (Fagherazzi et al. 2012). The fundamental difference is the presence of marsh vegetation which has a profound effect on flow within marsh canopies (Nepf, 2012).
This study determined the prevalence, age of onset, comorbidity, and impairment associated with specific phobia subtypes in the community. Data were drawn from the Dresden Mental Health Study (N = 2064), a representative community-based sample of young women in Dresden, Germany. The lifetime prevalence of any specific phobia was 12.8%, with subtypes ranging in prevalence between 0.2% (vomiting, infections) and 5.0% (animals). There were significant differences in the mean age of onset of specific phobias. Significant differences in comorbidity patterns also emerged between subtypes. No significant differences were found in level of impairment associated with the subtypes. The findings suggest that specific phobias are common among young women and that they differ in prevalence, associated comorbidity, and mean age of onset. These data suggest significant differences in the phenomenology and clinical significance of specific phobia subtypes.
Remote monitoring of mood disorders may be an effective and low resource option for patient follow-up, but relevant evidence remains very limited. This study explores real-life compliance and health services impacts of mood monitoring among patients with bipolar disorder in the UK.
Methods:
Patients with a diagnosis of bipolar disorder who were registered users of the True Colours monitoring system for at least 12 months at study assessment were included in this retrospective cohort study (n = 79). Compliance was measured as the proportion of valid depression and mania scale messages received in comparison to their expected numbers over the first 12 months of monitoring. Mental health service use data were extracted from case notes, costed using national unit costs, and compared 12 months before (pre-TC period) and 12 months after (TC period) patients’ engagement with monitoring. Associations with relevant patient factors were investigated in a multiple regression model.
Results:
Average compliance with monitoring was 82%. Significant increases in the annual use and costs of psychiatrist contacts and total mental health services were shown for patients newly referred to the clinic during the pre-TC period but not for long-term patients of the clinic. Psychiatric medication costs increased significantly between the pre-TC and TC periods (£ 235, P = 0.005) unrelated to patients’ referral status.
Conclusions:
Remote mood monitoring has good compliance among consenting patients with bipolar disorder. We found no associations between observed changes in mental health service costs and the introduction of monitoring except for the increase in psychiatric medication costs.
Orchestes fagi (Linnaeus) (Coleoptera: Curculionidae) is a pest of beech trees (Fagus sylvatica Linnaeus; Fagaceae) in Europe that has recently become established and invasive on American beech (Fagus grandifolia Ehrhart) in Nova Scotia, Canada. We tested the effects of trap type, trap colour, trap height, and lure on the numbers of O. fagi captured per trap with the objective of developing a survey tool to monitor the weevil’s spread. We captured O. fagi in significantly greater numbers on yellow, green, or white traps than on light blue, dark blue, or red traps. There were no significant interactions between trap colour and trap design. Sticky triangular prism traps caught significantly more O. fagi than did nonsticky intercept traps regardless of colour. No effect of trap height was observed. Mean catch of O. fagi was significantly greater on yellow sticky triangular prism traps than on commercially sourced yellow sticky cards. Baiting yellow, green, or white sticky prism traps with the host volatile 9-geranyl-p-cymene did not increase catch of O. fagi. Our results suggest that yellow, green, or white sticky prism traps are a useful tool for detecting O. fagi adults and monitoring the spread of this species in Canada.
Let $\mathfrak{g}=\mathfrak{g}\mathfrak{l}_{N}(\Bbbk )$, where $\Bbbk$ is an algebraically closed field of characteristic $p>0$, and $N\in \mathbb{Z}_{{\geqslant}1}$. Let $\unicode[STIX]{x1D712}\in \mathfrak{g}^{\ast }$ and denote by $U_{\unicode[STIX]{x1D712}}(\mathfrak{g})$ the corresponding reduced enveloping algebra. The Kac–Weisfeiler conjecture, which was proved by Premet, asserts that any finite-dimensional $U_{\unicode[STIX]{x1D712}}(\mathfrak{g})$-module has dimension divisible by $p^{d_{\unicode[STIX]{x1D712}}}$, where $d_{\unicode[STIX]{x1D712}}$ is half the dimension of the coadjoint orbit of $\unicode[STIX]{x1D712}$. Our main theorem gives a classification of $U_{\unicode[STIX]{x1D712}}(\mathfrak{g})$-modules of dimension $p^{d_{\unicode[STIX]{x1D712}}}$. As a consequence, we deduce that they are all parabolically induced from a one-dimensional module for $U_{0}(\mathfrak{h})$ for a certain Levi subalgebra $\mathfrak{h}$ of $\mathfrak{g}$; we view this as a modular analogue of Mœglin’s theorem on completely primitive ideals in $U(\mathfrak{g}\mathfrak{l}_{N}(\mathbb{C}))$. To obtain these results, we reduce to the case where $\unicode[STIX]{x1D712}$ is nilpotent, and then classify the one-dimensional modules for the corresponding restricted $W$-algebra.
Little is known about the prevalence of mental health outcomes in UK personnel at the end of the British involvement in the Iraq and Afghanistan conflicts.
Aims
We examined the prevalence of mental disorders and alcohol misuse, whether this differed between serving and ex-serving regular personnel and by deployment status.
Method
This is the third phase of a military cohort study (2014–2016; n = 8093). The sample was based on participants from previous phases (2004–2006 and 2007–2009) and a new randomly selected sample of those who had joined the UK armed forces since 2009.
Results
The prevalence was 6.2% for probable post-traumatic stress disorder, 21.9% for common mental disorders and 10.0% for alcohol misuse. Deployment to Iraq or Afghanistan and a combat role during deployment were associated with significantly worse mental health outcomes and alcohol misuse in ex-serving regular personnel but not in currently serving regular personnel.
Conclusions
The findings highlight an increasing prevalence of post-traumatic stress disorder and a lowering prevalence of alcohol misuse compared with our previous findings and stresses the importance of continued surveillance during service and beyond.
Declaration of interest:
All authors are based at King's College London which, for the purpose of this study and other military-related studies, receives funding from the UK Ministry of Defence (MoD). S.A.M.S., M.J., L.H., D.P., S.M. and R.J.R. salaries were totally or partially paid by the UK MoD. The UK MoD provides support to the Academic Department of Military Mental Health, and the salaries of N.J., N.G. and N.T.F. are covered totally or partly by this contribution. D.Mu. is employed by Combat Stress, a national UK charity that provides clinical mental health services to veterans. D.MacM. is the lead consultant for an NHS Veteran Mental Health Service. N.G. is the Royal College of Psychiatrists’ Lead for Military and Veterans’ Health, a trustee of Walking with the Wounded, and an independent director at the Forces in Mind Trust; however, he was not directed by these organisations in any way in relation to his contribution to this paper. N.J. is a full-time member of the armed forces seconded to King's College London. N.T.F. reports grants from the US Department of Defense and the UK MoD, is a trustee (unpaid) of The Warrior Programme and an independent advisor to the Independent Group Advising on the Release of Data (IGARD). S.W. is a trustee (unpaid) of Combat Stress and Honorary Civilian Consultant Advisor in Psychiatry for the British Army (unpaid). S.W. is affiliated to the National Institute for Health Research Health Protection Research Unit (NIHR HPRU) in Emergency Preparedness and Response at King's College London in partnership with Public Health England, in collaboration with the University of East Anglia and Newcastle University. The views expressed are those of the author(s) and not necessarily those of the National Health Service, the NIHR, the Department of Health, Public Health England or the UK MoD.
Background: Despite the global impact of bipolar disorder (BD), treatment success is limited. Challenges include syndromal and subsyndromal mood instability, comorbid anxiety, and uncertainty around mechanisms to target. The Oxford Mood Action Psychology Programme (OxMAPP) offered a novel approach within a cognitive behavioural framework, via mental imagery-focused cognitive therapy (ImCT). Aims: This clinical audit evaluated referral rates, clinical outcomes and patient satisfaction with the OxMAPP service. Method: Eleven outpatients with BD received ImCT in addition to standard psychiatric care. Mood data were collected weekly from 6 months pre-treatment to 6 months post-treatment via routine mood monitoring. Anxiety was measured weekly from start of treatment until 1 month post-treatment. Patient feedback was provided via questionnaire. Results: Referral and treatment uptake rates indicated acceptability to referrers and patients. From pre- to post-treatment, there was (i) a significant reduction in the duration of depressive episode relapses, and (ii) a non-significant trend towards a reduction in the number of episodes, with small to medium effect size. There was a large effect size for the reduction in weekly anxiety symptoms from assessment to 1 month follow-up. Patient feedback indicated high levels of satisfaction with ImCT, and underscored the importance of the mental imagery focus. Conclusions: This clinical audit provides preliminary evidence that ImCT can help improve depressive and anxiety symptoms in BD as part of integrated clinical care, with high patient satisfaction and acceptability. Formal assessment designs are needed to further test the feasibility and efficacy of the new ImCT treatment on anxiety and mood instability.
What are the lessons of the 2016 referendum on UK membership of the European Union (EU) regarding the effects of message framing? This article reports findings from an innovative online survey experiment based on a two-wave panel design. The findings show that, despite the expectation that campaign effects are generally small for high-salience issues – such as Brexit – the potential for campaign effects was high for the pro-EU frames. This suggests that within an asymmetrical information environment – in which the arguments for one side of an issue (anti-EU) are ‘priced in’, while arguments for the other side (pro-EU) have been understated – the potential for campaign effects in a single direction are substantial. To the extent that this environment is reflected in other referendum campaigns, the potential effect of pro-EU frames may be substantial.
It is widely accepted that stars do not form in isolation but result from the fragmentation of molecular clouds, which in turn leads to star cluster formation. Over time, clusters dissolve or are destroyed by interactions with molecular clouds or tidal stripping, and their members become part of the general field population. Star clusters are thus among the basic building blocks of galaxies. In turn, star cluster populations, from young associations and open clusters to old globulars, are powerful tracers of the formation, assembly, and evolutionary history of their parent galaxies. Although their importance (e.g., in mapping out the Milky Way) had been recognised for decades, major progress in this area has only become possible in recent years, both for Galactic and extragalactic cluster populations. Star clusters are the observational foundation for stellar astrophysics and evolution, provide essential tracers of galactic structure, and are unique stellar dynamical environments. Star formation, stellar structure, stellar evolution, and stellar nucleosynthesis continue to benefit and improve tremendously from the study of these systems. Additionally, fundamental quantities such as the initial mass function can be successfully derived from modelling either the Hertzsprung-Russell diagrams or the integrated velocity structures of, respectively, resolved and unresolved clusters and cluster populations. Star cluster studies thus span the fields of Galactic and extragalactic astrophysics, while heavily affecting our detailed understanding of the process of star formation in dense environments. This report highlights science results of the last decade in the major fields covered by IAU Commission 37: Star clusters and associations. Instead of focusing on the business meeting - the out-going president presentation can be found here: http://www.sc.eso.org/gcarraro/splinter2015.pdf - this legacy report contains highlights of the most important scientific achievements in the Commission science area, compiled by 5 well expert members.
Westerlund 1 is in all likelihood the most massive young cluster in the Milky Way, with a mass on the order of 105M⊙. To determine its bulk properties we have made multi-epoch radial velocity measurements for a substantial fraction of its OB stars and evolved supergiants and obtained multi-object spectroscopy of candidate cluster members in its locale. The results of these two studies show that Westerlund 1 is apparently subvirial and appears completely isolated, with hardly any massive star in its vicinity that could be associated with it in terms of distance modulus or radial velocity. The cluster halo does not extend much further than five parsec away from the centre. All these properties are very unusual among starburst clusters in the Local Universe, which tend to form in the context of large star-forming regions.
Observations have been suggested that star clusters could form from the rapid collapse and violent relaxation of substructured distributions. We investigate the collapse of fractal stellar distributions in no, weak, and very strong tidal fields. We find that the rapid collapse of substructure into spherical clusters happens quickly with no or a weak tidal field, but very strong tidal fields prevent a cluster forming. However, we also find that dense Plummer spheres are also rapidly destroyed in strong tidal fields. We suggest that this is why the low-mass star clusters cannot survive near the galactic centre which has strong tidal field.
Let G be a connected reductive algebraic group defined over an algebraically closed field of characteristic 0. We consider the commuting variety of the nilradical of the Lie algebra of a Borel subgroup B of G. In case B acts on with only a finite number of orbits, we verify that is equidimensional and that the irreducible components are in correspondence with the distinguishedB-orbits in . We observe that in general is not equidimensional, and determine the irreducible components of in the minimal cases where there are infinitely many B-orbits in .
Let $G(q)$ be a finite Chevalley group, where $q$ is a power of a good prime $p$, and let $U(q)$ be a Sylow $p$-subgroup of $G(q)$. Then a generalized version of a conjecture of Higman asserts that the number $k(U(q))$ of conjugacy classes in $U(q)$ is given by a polynomial in $q$ with integer coefficients. In [S. M. Goodwin and G. Röhrle, J. Algebra 321 (2009) 3321–3334], the first and the third authors of the present paper developed an algorithm to calculate the values of $k(U(q))$. By implementing it into a computer program using $\mathsf{GAP}$, they were able to calculate $k(U(q))$ for $G$ of rank at most five, thereby proving that for these cases $k(U(q))$ is given by a polynomial in $q$. In this paper we present some refinements and improvements of the algorithm that allow us to calculate the values of $k(U(q))$ for finite Chevalley groups of rank six and seven, except $E_7$. We observe that $k(U(q))$ is a polynomial, so that the generalized Higman conjecture holds for these groups. Moreover, if we write $k(U(q))$ as a polynomial in $q-1$, then the coefficients are non-negative.
Under the assumption that $k(U(q))$ is a polynomial in $q-1$, we also give an explicit formula for the coefficients of $k(U(q))$ of degrees zero, one and two.
The business session for Commission 37 was held on 24 August 2012 at the IAU General Assembly in Beijing. The meeting was attended by about a dozen members of our Comission, including President Carraro, VP de Grijs and several committee members. We introduced ourselves and then went through a powerpoint presentation first prepared by outgoing President Elmegreen and revised by incoming President Carraro. The contents of the powerpoint presentation are given in this summary.
We consider the finite W-algebra U(𝔤,e) associated to a nilpotent element e∈𝔤 in a simple complex Lie algebra 𝔤 of exceptional type. Using presentations obtained through an algorithm based on the PBW-theorem for U(𝔤,e), we verify a conjecture of Premet, that U(𝔤,e) always has a 1-dimensional representation when 𝔤 is of type G2, F4, E6 or E7. Thanks to a theorem of Premet, this allows one to deduce the existence of minimal dimension representations of reduced enveloping algebras of modular Lie algebras of the above types. In addition, a theorem of Losev allows us to deduce that there exists a completely prime primitive ideal in U(𝔤)whose associated variety is the coadjoint orbit corresponding to e.
Most stars seem to form in clusters, but the vast majority of these clusters do not seem to survive much beyond their embedded phase. The most favoured mechanism for the early destruction of star clusters is the effect of the removal of residual gas by feedback which dramatically changes the cluster potential. The effects of feedback depend on the ratio of the masses of stars and gas, and the velocity dispersion of the stars at the onset of gas removal. As gas removal is delayed by a few Myr from star formation these crucial parameters can change significantly from their initial values. In particular, in dynamically cool and clumpy clusters, the stars will collapse to a far denser state and if they decouple from the gas then gas removal may be far less destructive than previously thought. This might well help explain the survival of very massive clusters, such as globular clusters, without the need for extremely high star formation efficiencies or initial masses far greater than their current masses.
We present the first results of a large suite of convergence tests between Adaptive Mesh Refinement (AMR) Finite Difference Hydrodynamics and Smoothed Particle Hydrodynamics (SPH) simulations of the non-linear thin shell instability and the Kelvin-Helmholtz instability. We find that the two methods converge in the limit of high resolution and accuracy. AMR and SPH simulations of the non-linear thin shell instability converge with each other with standard algorithms and parameters. The Kelvin-Helmholtz instability in SPH requires both an artificial conductivity term and a kernel with larger compact support and more neighbours (e.g. the quintic kernel) in order converge with AMR. For purely hydrodynamical problems, SPH simulations take an order of magnitude longer than the grid code when converged.