Most species exhibit morphological stasis following speciation, and this is a key feature of the concept of punctuated equilibria. Stasis results in species often having long durations on geological timescales. Durational data are fundamental to many types of paleobiological analyses and are ideally based on occurrence data represented by specimens in museum collections. Often, however, durational data are presented without supporting information about voucher specimens that document stratigraphic ranges, including first and last appearances. We use the iconic Devonian trilobite Eldredgeops rana to demonstrate that durational data can be challenging to determine at multiple taxonomic levels. Further, we show that different datasets—including Sepkoski’s published databases, the Paleobiology Database, and iDigBio—give discordant results concerning first and last occurrences. We argue that paleontologists should adopt two general best practices to help address these problems. First, systematists should clearly identify voucher specimens that represent stratigraphic occurrences of species. Second, we recommend that high-quality photographs of occurrence vouchers be placed in open access websites and be assigned public domain licensing before being paywalled by journals. Such voucher images also have a role to play in training artificial intelligence (AI) systems that will be applied to future paleobiological questions.

The Pleistocene/Holocene transition furnishes a classic example of apparent evolutionary stasis during a period of major environmental change, where observed environmental clines might predict evolutionary change. We have previously attempted to assess whether or not body size and shape were static in the extensive Quaternary vertebrate fauna of Rancho La Brea (RLB). However, the validity of time-series studies depends on dating, and there are indications that previous approaches based on pit mean radiocarbon ages may be misleading. Here we have compiled and recalibrated all available RLB radiocarbon ages, reanalyzed our morphometric data using a novel method for bootstrap resampling of calibrated C age distributions to estimate a time series of populations, and fit the time series with a range of simple evolutionary time-series models.

Although the shortness of our time series tends to favor nondirectional models and is insufficient to allow reliable discrimination between punctuated and gradual change, the results can still be clearly interpreted. The population means for most anatomical elements in most species at RLB do genuinely appear to be static through the Pleistocene/Holocene transition, as previously published. Some species exhibit previously undetected changes in population mean size and shape, including Smilodon, Gymnogyps, and Equus. However, the timing of change is variable among the non-static species and generally does not correspond to changes in temperature, and thus resists a Bergmann’s rule interpretation. Considering the species by ecological category may reveal more about the effects of climate regime shifts.

Ichthyosauria, Plesiosauria, and Metriorhynchidae were apex predators in Mesozoic oceanic trophic networks. Previous stable oxygen isotope studies suggested that several taxa belonging to these groups were endothermic and that some of them were homeothermic organisms. However, these conclusions remain contentious owing to the associated uncertainties regarding the δ18O value and oxygen isotope fractionation relative to environmental seawater. Here, we present new bioapatite phosphate δ18O values (δ18Op) of Ichthyosauria, Plesiosauria, and Metriorhynchidae (Middle Jurassic to Early Cretaceous) recovered from mid- to high paleolatitudes to better constrain their thermophysiology and investigate the presence of regional heterothermies. The intraskeletal δ18Op variability failed to reveal distinct heterothermic patterns within any of the specimens, indicating either intrabody temperature homogeneity or an overriding diagenetic overprint of the original biological δ18Op bone record. Body temperature estimates have been reassessed from new and published δ18Op values of well-preserved isolated teeth, recently revised Mesozoic latitudinal δ18O oceanic gradients, and 18O-enrichment factors of fully aquatic air-breathing vertebrates. Our results confirm that Ichthyosauria were homeothermic endotherms (31°C to 41°C), while Plesiosauria were likely poikilothermic endotherms (27°C to 34°C). The new body temperature estimates of the Metriorhynchidae (25°C to 32°C) closely follow ambient temperatures and point to poikilothermic strategy with no or little endothermic ability. These results improve our understanding of Mesozoic marine reptile thermoregulation and indicate that due to their limited body temperature variations, the δ18Op values from Ichthyosauria fossil remains could be used as valuable archives of Mesozoic oceans δ18Osw values that may help improve paleoenvironmental and paleoclimatic reconstructions.

The Neotropics host the highest diversity of plants on the Earth today and have done since at least the late Paleogene (~58 Ma). Several mechanisms have been proposed to explain this elevated diversity, but the empirical patterns of Neotropical plant diversification that would test key aspects of those mechanisms are still unclear. We use an extensive palynological database from northern South America to characterize patterns of extinction, origination, and diversity and their possible drivers since the Paleogene. The foreland Llanos basin of Colombia preserves the evolutionary history of Neotropical vegetation as well as the geological evolution of northern South America, offering a unique opportunity to study the relationship between the geological and fossil records. The palynological record of the Llanos basin has been intensely studied mainly for oil exploration, and we use this information to infer the evolutionary history of Neotropical vegetation in Colombia during the Cenozoic. There is no straightforward relationship between global temperature and Neotropical plant diversity. Nevertheless, environmental change had an important influence on the dynamics of diversification, especially during volatile climate intervals such as the Paleocene–Eocene and the Pleistocene. Pulses of regional extinction were driven by large-scale temperature excursions, including both warming and cooling phases. Time-lagged origination pulses results in rapid floral replacement on a timescale of 1 Myr. Origination and extinction are essentially balanced on long timescales, leading to a near-zero long-term net diversification rate. Regional geological events, like the uplift of the Andean Cordillera, and changes in paleogeography also played an important role in Neotropical plant diversification.

The evolution of mammalian innovations like elevated growth rates, endothermy, and live birth has been the subject of paleobiological work for decades. Bone histology provides one of the best lines of evidence for assessing growth rates and life-history traits in the fossil record. However, little ontogenetic information is available for nonmammalian cynodonts, the stock lineage that eventually gave rise to mammals. Here, I report the bone histology of two traversodontid cynodonts from the Triassic Manda Formation of Tanzania. Using two femoral size series, I correlate bone tissue composition and limb size in Scalenodon angustifrons and Luangwa drysdalli. Fifteen individuals were analyzed from seven penecontemporaneous localities to assess intraspecific histovariation within traversodontid ontogenetic development for the first time. My results show that Scalenodon and Luangwa have disparate life histories despite being similarly sized contemporaries. Luangwa is characterized by parallel-fibered bone that transitions to woven-parallel bone early in ontogeny, interpreted as a growth spurt. This increase in growth rate is seen in small- and middle-sized individuals but is resorbed and remodeled in the largest, skeletally mature individual. By contrast, Scalenodon is characterized by woven-parallel tissue in early ontogeny. However, femur size is not correlated with changes in bone tissue composition, as multiple individuals show peripheral slower-growing tissue regardless of size, interpreted as highly developmentally plastic growth. Together, these results demonstrate that coeval members of Traversodontidae show disparate life histories. The underlying mechanisms to explain different life histories in these taxa are likely due to (1) intrinsic differences in growth rates and (2) varying degrees of developmentally flexible growth. The implication of this work is that intraspecific variation in growth dynamics may be more widespread than currently understood in cynodonts and that size is not a good indicator of maturity for some species.

Body mass is an important facet of reconstructing the paleobiology of fossil species and has, historically, been estimated from individual skeletal measurements. This paper demonstrates the potential advantages of estimating body mass using 3D geometric morphometrics on limb bones, which allows size to be explicitly contextualized within the functional morphology of the animal. Geometric morphometrics of the humerus and femur is used to estimate body mass in domestic dogs and wild canids, and the resulting estimates are compared with estimates made using limb bone dimensions and centroid size. In both groups, 3D methods produced more accurate estimates of body mass than linear dimensions. Additionally, centroid size was a poor predictor of body mass and should not be preferred over linear measurements. The use of 3D methods also reveals specific aspects of shape that are associated with different sizes. In general, relatively heavier individuals were associated with more robust bones and wider articulation sites, as well as larger attachment sites for muscles related to flexion and extension of the shoulder and hip joints. The body-mass equations constructed based on dogs were further evaluated on wild canids, as a test of their potential efficacy on fossil canids. With some adjustments, the body-mass estimation equations made for domestic dogs were able to reliably predict the mass of wild canids. These equations were then used to estimate body mass for a selection of fossil canids: Canis latrans, 16 kg; Aenocyon dirus, 67 kg; Phlaocyon multicuspus, 8 kg; and Hesperocyon gregarius, 2.5 kg.

The theory of punctuated equilibria, introduced in paleobiology, postulates enduring morphological stability in species interrupted by rapid phenotypic change at speciation events. It played a pivotal role in evolutionary biology, reshaping perspectives and triggering a conceptual shift by redefining species as discrete and enduring entities, and paving the way for a hierarchical model of the organic world. This hierarchical approach initially faced limited attention but experienced a resurgence in the new millennium. The revived interest in hierarchical models, integrating genomics, computational methodologies, and complex systems sciences, has provided a more comprehensive theoretical foundation for understanding biological evolution. This resurgence has fueled empirical studies across various disciplines, from genomics to paleobiology, offering a potential unifying theory within the biological sciences.

This paper posits the efficacy of the hierarchy theory of biology as a comprehensive, unifying framework for understanding the organic world. Despite its generality, the theory remains agnostic to specific mechanisms, allowing flexibility to accommodate diverse biological models. Through its application to speciation analysis, the hierarchy theory unveils causal processes, identifies entities and interactions, and bridges the economic and genealogical hierarchies. Acknowledging its potential for refinement based on empirical data, the hierarchy theory of biology stands as a paradigm, shaping interdisciplinary exploration and inspiring investigations across disciplines.

A central goal in ecology is investigating the impact of major perturbations, such as invasion, on the structure of biological communities. One promising line of inquiry is using co-occurrence analyses to examine how species’ traits mediate coexistence and how major ecological, climatic, and environmental disturbances can affect this relationship and underlying mechanisms. However, present communities are heavily influenced by anthropogenic behaviors and may exhibit greater or lesser resistance to invasion than communities that existed before human arrival. Therefore, to disentangle the impact of individual disturbances on mammalian communities, it is important to examine community dynamics before humans. Here, we use the North American fossil record to evaluate the co-occurrence structure of mammals across the Great American Biotic Interchange. We compiled 126 paleocommunities from the late Pliocene (4–2.5 Ma) and early Pleistocene (2.5–1 Ma). Genus-level co-occurrence was calculated to identify significantly aggregated (co-occur more than expected) and segregated (co-occur less than expected) genus pairs. A functional diversity analysis was used to calculate functional distance between genus pairs to evaluate the relationship between pair association strength and functional role. We found that the strength distribution of aggregating and segregating genus pairs does not significantly change from the late Pliocene to the early Pleistocene, even with different mammals forming the pairs, including immigrant mammals from South America. However, we did find that significant pairs, both aggregations and segregations, became more similar in their functional roles following the Plio-Pleistocene transition. Due to different mammals and ecological roles forming significant associations and the stability of co-occurrence structure across this interval, our study suggests that mammals have fundamental ways of assembling that may have been altered by humans in the present.

The common-cause hypothesis says that factors regulating the sedimentary record also exert macroevolutionary controls on speciation, extinction, and biodiversity. I show through computational modeling that common cause factors can, in principle, also control microevolutionary processes of trait evolution. Using Bermuda and its endemic land snail Poecilozonites, I show that the glacial–interglacial sea-level cycles that toggle local sedimentation between slow pedogenesis and rapid eolian accumulation could also toggle evolution rates between long slow phases associated with large geographic ranges and short rapid phases associated with small, fragmented ranges and “genetic surfing” events. Patterns produced by this spatially driven process are similar to the punctuated equilibria patterns that Gould inferred from the fossil record of Bermuda, but without speciation or true stasis. Rather, the dynamics of this modeled system mimic a two-rate Brownian motion process (even though the rate parameter is technically constant) in which the contrast in rate and duration of the phases makes the slower one appear static. The link between sedimentation and microevolution in this model is based on a sediment-starved island system, but the principles may apply to any system where physical processes jointly control the areal extents of sedimentary regimes and species’ distributions.

Analysis of length-frequency data using the ELEFAN (Electronic Length-Frequency Analysis) approach and software is widely used to quantify the growth, mortality, longevity, and related parameters of Recent marine animals. Here we analyze a sample (n = 211) of the Ediacaran metazoan Parvancorina minchami Glaessner, 1958, from the Vendian siliciclastic marine deposits of the southeastern White Sea region, Russia. The results fit a von Bertalanffy equation with the parameters L∞ = 2 cm, K = yr−1 (with t0 not estimated) and an instantaneous rate of mortality (M) of 1.44 yr−1, implying M/K ≈ 2, as commonly occurs in Recent small invertebrates. These parameter values also imply a longevity for P. minchami of about 4 yr. The concepts and approach used here, previously applied to an Ordovician trilobite and a Cambrian radiodont, suggest that inferences on growth, mortality, longevity, and related parameters can be obtained from suitable size-frequency samples of long-extinct metazoans, opening new vistas on their growth dynamics and functional roles in ancient ecosystems.

It is a pleasure to be invited to contribute to the celebration of the publication of “punctuated equilibria” (“punk eek”) 50 years ago—the canonical version I did with Steve Gould (Eldredge and Gould 1972) at the behest of Tom Schopf for his visionary project to inject more thought, more interpretation and theory, into the working lives of paleontologists.