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A model is proposed for the one-dimensional spectrum and streamwise Reynolds stress in pipe flow for arbitrarily large Reynolds numbers. Constructed in wavenumber space, the model comprises four principal contributions to the spectrum: streaks, large-scale motions, very-large-scale motions and incoherent turbulence. It accounts for the broad and overlapping spectral content of these contributions from different eddy types. The model reproduces well the broad structure of the premultiplied one-dimensional spectrum of the streamwise velocity, although the bimodal shape that has been observed at certain wall-normal locations, and the $-5/3$ slope of the inertial subrange, are not captured effectively because of the simplifications made within the model. Regardless, the Reynolds stress distribution is well reproduced, even within the near-wall region, including key features of wall-bounded flows such as the Reynolds number dependence of the inner peak, the formation of a logarithmic region, and the formation of an outer peak. These findings suggest that many of these features arise from the overlap of energy content produced by both inner- and outer-scaled eddy structures combined with the viscous-scaled influence of the wall. The model is also used to compare with canonical turbulent boundary layer and channel flows, and despite some differences being apparent, we speculate that with only minor modifications to its coefficients, the model can be adapted to these flows as well.
There is growing evidence that smoking increases the risk of developing psychiatric disorders, but the underlying mechanisms are largely unknown. We examine brain structure as a potential pathway between smoking and psychiatric disease liability.
Methods
We test associations between smoking (initiation, cigarettes per day, cessation, lifetime use) and depression, bipolar disorder, and schizophrenia, with and without correcting for volume of the amygdala, hippocampus, lateral and medial orbitofrontal cortex, superior frontal context, and cortical thickness and surface area. We use three methods that use summary statistics of genome-wide association studies to investigate genome-wide and local genetic overlap (genomic structural equation modeling, local analysis of (co)variant association), as well as causal associations (Mendelian randomization).
Results
While we find causal effects of smoking on brain volume in different brain areas, and with psychiatric disorders, brain volume did not seem to mediate the effect of smoking on psychiatric disorders.
Conclusions
While these findings are limited by characteristics of the included summary statistics (e.g. sample size), we conclude that brain volume of these areas is unlikely to explain a substantial part of any effect of smoking on psychiatric disorders. Nevertheless, genetic methods are valuable tools for exploring other potential mechanisms, such as brain functional connectivity, foregoing the need to collect all phenotypes in one dataset.
It remains unclear which individuals with subthreshold depression benefit most from psychological intervention, and what long-term effects this has on symptom deterioration, response and remission.
Aims
To synthesise psychological intervention benefits in adults with subthreshold depression up to 2 years, and explore participant-level effect-modifiers.
Method
Randomised trials comparing psychological intervention with inactive control were identified via systematic search. Authors were contacted to obtain individual participant data (IPD), analysed using Bayesian one-stage meta-analysis. Treatment–covariate interactions were added to examine moderators. Hierarchical-additive models were used to explore treatment benefits conditional on baseline Patient Health Questionnaire 9 (PHQ-9) values.
Results
IPD of 10 671 individuals (50 studies) could be included. We found significant effects on depressive symptom severity up to 12 months (standardised mean-difference [s.m.d.] = −0.48 to −0.27). Effects could not be ascertained up to 24 months (s.m.d. = −0.18). Similar findings emerged for 50% symptom reduction (relative risk = 1.27–2.79), reliable improvement (relative risk = 1.38–3.17), deterioration (relative risk = 0.67–0.54) and close-to-symptom-free status (relative risk = 1.41–2.80). Among participant-level moderators, only initial depression and anxiety severity were highly credible (P > 0.99). Predicted treatment benefits decreased with lower symptom severity but remained minimally important even for very mild symptoms (s.m.d. = −0.33 for PHQ-9 = 5).
Conclusions
Psychological intervention reduces the symptom burden in individuals with subthreshold depression up to 1 year, and protects against symptom deterioration. Benefits up to 2 years are less certain. We find strong support for intervention in subthreshold depression, particularly with PHQ-9 scores ≥ 10. For very mild symptoms, scalable treatments could be an attractive option.
Direct numerical simulations are performed for turbulent forced convection in a half-channel flow with a wall oscillating either as a spanwise plane oscillation or to generate a streamwise travelling wave. The friction Reynolds number is fixed at $Re_{\tau _0} = 590$, but the Prandtl number $Pr$ is varied from 0.71 to 20. For $Pr\gt 1$, the heat transfer is reduced by more than the drag, 40 % compared with 30 % at $Pr=7.5$. This outcome is related to the different responses of the velocity and thermal fields to the Stokes layer. It is shown that the Stokes layer near the wall attenuates the large-scale energy of the turbulent heat flux and the turbulent shear stress, but amplifies their small-scale energy. At higher Prandtl numbers, the thinning of the conductive sublayer means that the energetic scales of the turbulent heat flux move closer to the wall, where they are exposed to a stronger Stokes layer production, increasing the contribution of the small-scale energy amplification. A predictive model is derived for the Reynolds and Prandtl number dependence of the heat-transfer reduction based on the scaling of the thermal statistics. The model agrees well with the computations for Prandtl numbers up to 20.
The genus Trypanosoma Gruby, 1843 encompasses unique, flagellate haemoparasites infecting all vertebrate classes globally (excluding Antarctica). While trypanosomes in terrestrial mammals are well-studied due to their medical and veterinary significance, those in fishes remain largely unexplored, with limited data on their life cycles and ecological roles. Furthermore, the phylogenetic relationships of numerous aquatic species are unresolved. This gap is notable in South Africa, a region with high marine fish biodiversity, yet only 2 documented marine trypanosome species, 1 in teleosts and 1 in elasmobranchs are known. Our research aims to bridge this knowledge gap for marine fish trypanosomes along South Africa’s southern coast. Blood samples were collected from 246 fishes spanning 23 species at Chintsa East, Tsitsikamma (Garden Route National Park), Boknes, Kariega River Estuary and Groot River West Estuary from 2020 to 2023. Giemsa-stained blood smears were screened for trypanosomes, which were morphologically characterized. Molecular analyses targeting the 18S rRNA gene region were conducted on blood samples positive for trypanosomes. Combined morphological and molecular evidence identified 4 Trypanosoma species: 1 known species, Trypanosoma nudigobii from the klipfish (Clinus superciliosus) and 3 new species: Trypanosoma sp. A from the prison goby (Caffrogobius gilchristi), Trypanosoma bakana n. sp. from the white steenbras (Lithognathus lithognathus) and Trypanosoma bokkom n. sp. from 5 mullet species [the grooved mullet (Chelon dumerili), South African mullet (Chelon richardsonii), striped mullet (Chelon tricuspidens), fl athead grey mullet (Mugil cephalus) and the freshwater mullet (Pseudomyxus capensis)].
Brazil has the richest biodiversity of Ergasilidae on Earth, with 76 species in 19 genera. However, several authors suggested that there is still great potential for discoveries, especially regarding genetic data that are still scarce for ergasilids from this region. To expand our knowledge of this taxon, we conducted an integrative study involving morphological (light and scanning electron microscopy) and molecular analyses of ergasilids from fishes sampled in the Pardo River, São Paulo State, Brazil. Two ergasilid species were found, Gamispatulus schizodontis and Rhinergasilus piranhus parasitizing the nostrils of 5 fish species (native and exotic): (i) R. piranhus from Astyanax lacustris; Cyphocharax modestus; Coptodon rendalli; Psalidodon bockmanni; and (ii) G. schizodontis from Serrasalmus maculatus. Additionally, we redescribed R. piranhus herein based on novelties and discrepancies found in the antennules, antennae, body segments and ornamentation of the swimming legs. Novel molecular data of ribosomal (18S and 28S rDNA) and/or mitochondrial (cox 1) genes were provided for both species and the phylogenetic relationships among the ergasilids were tested. Relationships between species/genera are still uncertain in Ergasilidae, but it was possible to verify the formation of 5 well-supported terminal clades – i.e. including a clade formed only by Neotropical species. More molecular data are needed to test this hypothesis, but the clades observed here represent good targets for future taxonomic revisions. The occurrence of R. piranhus specimens in the introduced fish, Co. rendalli can indicate (for the first time) host switching in this parasite species and spillback from native to introduced hosts.
Marine parasites remain understudied in South Africa with little information available on their diversity and the effects these parasites may have on their hosts. This is especially true for parasitic copepods within the family Ergasilidae. Among the 4 genera known in Africa, Ergasilus Nordmann, 1832 is the most speciose with 19 reported species. However, this represents only 12% (19/163) of the global diversity. Furthermore, only 5 known African species are reported from marine environments, and only 1 is reported from the South African coastline. Given the rich biodiversity along this coastline, a high marine parasite diversity could be expected from these shores. As a case study, the Evileye blaasop, Amblyrhynchote honckenii (Bloch), a marine and brackish fish species, was screened for parasites along the South African coastline. This resulted in the discovery of 2 species of Ergasilus new to science (Ergasilus arenalbus n. sp. and Ergasilus chintensis n. sp.), which makes them the second and third ergasilid species reported for tetraodontid pufferfishes worldwide. Although genetically distinct, the 2 newly described species clustered in the same subclade within the Ergasilidae based on 18S rDNA, 28S rDNA and COI mtDNA phylogenies. The newly described species differ morphologically from each other, and their respective congeners based on the size and armature of the antenna; body segmentation; and general ornamentation throughout the entire body. The addition of these 2 new species from a single host species indicates that South Africa's marine fishes contain most probably a hidden parasitic copepod diversity that is worth exploring.
An important contributor to the decreased life expectancy of individuals with schizophrenia is sudden cardiac death. Arrhythmic disorders may play an important role herein, but the nature of the relationship between schizophrenia and arrhythmia is unclear.
Aims
To assess shared genetic liability and potential causal effects between schizophrenia and arrhythmic disorders and electrocardiogram (ECG) traits.
Method
We leveraged summary-level data of large-scale genome-wide association studies of schizophrenia (53 386 cases, 77 258 controls), arrhythmic disorders (atrial fibrillation, 55 114 cases, 482 295 controls; Brugada syndrome, 2820 cases, 10 001 controls) and ECG traits (heart rate (variability), PR interval, QT interval, JT interval and QRS duration, n = 46 952–293 051). We examined shared genetic liability by assessing global and local genetic correlations and conducting functional annotation. Bidirectional causal relations between schizophrenia and arrhythmic disorders and ECG traits were explored using Mendelian randomisation.
Results
There was no evidence for global genetic correlation, except between schizophrenia and Brugada syndrome (rg = 0.14, 95% CIs = 0.06–0.22, P = 4.0E−04). In contrast, strong positive and negative local correlations between schizophrenia and all cardiac traits were found across the genome. In the most strongly associated regions, genes related to immune and viral response mechanisms were overrepresented. Mendelian randomisation indicated that liability to schizophrenia causally increases Brugada syndrome risk (beta = 0.14, CIs = 0.03–0.25, P = 0.009) and heart rate during activity (beta = 0.25, CIs = 0.05–0.45, P = 0.015).
Conclusions
Despite little evidence for global genetic correlation, specific genomic regions and biological pathways emerged that are important for both schizophrenia and arrhythmia. The putative causal effect of liability to schizophrenia on Brugada syndrome warrants increased cardiac monitoring and early medical intervention in people with schizophrenia.
A new wall-wake law is proposed for the streamwise turbulence in the outer region of a turbulent boundary layer. The formulation pairs the logarithmic part of the profile (with a slope $A_1$ and additive constant $B_1$) to an outer linear part, and it accurately describes over 95 % of the boundary layer profile at high Reynolds numbers. Once the slope $A_1$ is fixed, $B_1$ is the only free parameter determining the fit. Most importantly, $B_1$ is shown to follow the same trend with Reynolds number as the wake factor in the wall-wake law for the mean velocity, which is tied to changes in scaling of the mean flow and the turbulence that occur at low Reynolds number.
Larval stages of the widely distributed digenean species Proctoeces maculatus (Looss, 1901) were reported 40 years ago from South Africa in the common octopus, Octopus vulgaris Cuvier (Octopodidae). However, the absence of adult specimens and molecular data from this region has hindered a comprehensive understanding of its distribution. In this study, we collected three species of intertidal and near-shore marine fishes [Clinus superciliosus (L.) (Clinidae), Diplodus capensis (Smith) (Sparidae) and Sparodon durbanensis (Castelnau) (Sparidae)] along the South African coast and discovered adult specimens of P. maculatus at five localities. By employing a combination of morphological and molecular techniques, including 28S rDNA, 18S rDNA and COI mtDNA analyses, the first report of adult P. maculatus from South Africa is presented. The findings encompass a comprehensive morphological description and molecular data, illuminating the true distribution of this species in the region.
We investigate the role of inter-scale interactions in the high-Reynolds-number skin-friction drag reduction strategy reported by Marusic et al. (Nat. Commun., vol. 12, 2021). The strategy involves imposing relatively low-frequency streamwise travelling waves of spanwise velocity at the wall to actuate the drag generating outer scales. This approach has proven to be more energy efficient than the conventional method of directly targeting the drag producing inner scales, which typically requires actuation at higher frequencies. Notably, it is observed that actuating the outer scales at low frequencies leads to a substantial attenuation of the major drag producing inner scales, suggesting that the actuations affect the nonlinear inner–outer coupling inherently existing in wall-bounded flows. In the present study, we find that increased drag reduction, through imposition of spanwise wall oscillations, is always associated with an increased coupling between the inner and outer scales. This enhanced coupling emerges through manipulation of the phase relationships between these triadically linked scales, with the actuation forcing the entire range of energy-containing scales, from the inner (viscous) to the outer (inertial) scales, to be more in phase. We also find that a similar enhancement of this nonlinear coupling, via manipulation of the inter-scale phase relationships, occurs with increasing Reynolds number for canonical turbulent boundary layers. This indicates improved efficacy of the energy-efficient drag reduction strategy at very high Reynolds numbers, where the energised outer scales are known to more strongly superimpose and modulate the inner scales. Leveraging the inter-scale interactions, therefore, offers a plausible mechanism for achieving energy-efficient drag reduction at high Reynolds numbers.
The Taita Falcon Falco fasciinucha is known to occur and breed at only a few locations in eastern and southern Africa and is currently listed as globally “Vulnerable” and “Critically Endangered” in South Africa. An accurate estimation of its conservation status is however hampered by a lack of data and understanding of the species’ habitat requirements and competitive interactions with congeners. Our aim was to address some of these knowledge gaps. We conducted cliff-nesting raptor surveys across a substantial area of the Mpumalanga/Limpopo escarpment in north-eastern South Africa and modelled habitat suitability for nesting Taita Falcons in relation to the proximity of conspecifics and a community of five other sympatric cliff-nesting raptor species, and in relation to a suite of biotic and abiotic environmental variables. Results suggested the location of Taita Falcon nest sites was negatively associated with distance to the nearest pair of conspecifics and the nearest pair of Lanner Falcons Falco biarmicus, and positively associated with tracts of intact, unfragmented forest and woodland around the base of the cliffs. Our results indicated that Taita Falcon and Lanner Falcon appeared to be responding in opposite ways to a directional change in environmental conditions. This response appeared to be detrimental to Taita Falcon and beneficial to Lanner Falcon. Furthermore, the degradation and destruction of Afrotropical woodland and forest is a documented and ongoing reality, both locally and across much of the Taita Falcon’s global distribution. We argue that our findings are sufficient to justify uplisting Taita Falcon to globally “Endangered”.
The wall dependence of length scales used to describe large- and small-scale structures of turbulence is examined using highly resolved experiments in zero-pressure-gradient turbulent boundary layers and pipe flows spanning the range $2000< Re_\tau <37\ 700$. Of particular interest is the influence of external intermittency on the scaling of these length scales. It is found that when suitable scaling parameters are selected and external intermittency is accounted for, the dissipative motions follow inner scaling even into the outer-scaled regions of the flow, and that certain large-scale descriptions follow outer scaling even in the inner-scaled regions of the flow. The wall dependence is the same for both internal pipe and external boundary layer flows, and the different length scales can be related to recognizable features in the longitudinal wavenumber spectrum.
Vortical impulse theory is used to investigate the relationship between turbine thrust and the near-wake velocity and vorticity fields. Three different hypotheses regarding the near-wake structure allow the derivation of novel expressions for the thrust on a steadily rotating wind turbine, and these are tested using stereoscopic particle-image velocimetry (PIV) data acquired just behind a rotor in a water channel. When one assumes that vortex lines and streamlines are aligned in a rotor-fixed frame of reference, one obtains a PIV-based thrust estimate that fails even to capture the trend of the directly measured thrust, and this failure is attributed to an implicit assumption that most of the generated thrust does useful work. When one neglects the axial gradients of radial velocity, the PIV-based thrust estimate captures the measured thrust trend, but underpredicts its magnitude by approximately $33\,\%$. The third and most promising physical proposition treats the trailing vortices as purely ‘rolling’ structures that exhibit zero-strain rate in their cores, with the corresponding thrust estimates in close agreement with direct thrust measurements. This best-performing expression appears as a correction to the classical thrust expression from momentum theory, possessing additional squared-velocity terms that can account for the high-thrust regime of turbine operation that is typically addressed empirically.
Background: Early recognition of neonatal seizures secondary to pathogenic variants in potassium or sodium channel coding genes is crucial, as these seizures are often resistant to commonly used anti-seizure medications, but respond well to sodium-channel blockers. We report a unique aEEG pattern in neonatal seizures caused by SCN2A and KCNQ3 pathogenic variants, as well as adding regular EEG description. Methods: International multicentre descriptive study, reporting clinical characteristics, aEEG and conventional EEG findings of 10 newborns with seizures due to pathogenic SCN2A and KCNQ3 gene variants. Results: Seizures started in the first postnatal week. Seizure semiology typically included tonic posturing with apnea and desaturation. The aEEG showed a characteristic sequence of brief onset with a decrease, followed by a quick rise, and then postictal amplitude attenuation. This pattern correlated with bilateral attenuation in the EEG at onset, followed by rhythmic discharges ending in several seconds of post-ictal amplitude suppression. The majority of patients became seizure free upon initiation of a sodium-channel blocker. Conclusions: Neonatal seizures caused by SCN2A and KCNQ3 mutations can be recognized by a characteristic ictal aEEG pattern and clinical semiology. Awareness of this pattern facilitates the prompt initiation of precision treatment with sodium-channel blockers even before genetic test results are available.
Our understanding of turbulent boundary layer scaling and structure has advanced greatly in the past 20 to 30 years. On the computational side, direct numerical simulations and large-eddy simulations have made extraordinary contributions as numerical methods and computational resources have advanced, while on the experimental side major advances in instrumentation have made available new imaging and quantitative techniques that provide unprecedented accuracy and detail. Here, I illustrate how the development of such experimental methods have aided our progress by reference to some particular topics related to the structure of turbulent boundary layers: the power law scaling of the mean velocity and its relationship to the mesolayer; the scaling of the outer layer with regard to the log law in turbulence; the development of the outer peak; and the scaling of the turbulent stresses in the near-wall region, with an emphasis on the streamwise component.
Cognitive deficits may be characteristic for only a subgroup of first-episode psychosis (FEP) and the link with clinical and functional outcomes is less profound than previously thought. This study aimed to identify cognitive subgroups in a large sample of FEP using a clustering approach with healthy controls as a reference group, subsequently linking cognitive subgroups to clinical and functional outcomes.
Methods
204 FEP patients were included. Hierarchical cluster analysis was performed using baseline brief assessment of cognition in schizophrenia (BACS). Cognitive subgroups were compared to 40 controls and linked to longitudinal clinical and functional outcomes (PANSS, GAF, self-reported WHODAS 2.0) up to 12-month follow-up.
Results
Three distinct cognitive clusters emerged: relative to controls, we found one cluster with preserved cognition (n = 76), one moderately impaired cluster (n = 74) and one severely impaired cluster (n = 54). Patients with severely impaired cognition had more severe clinical symptoms at baseline, 6- and 12-month follow-up as compared to patients with preserved cognition. General functioning (GAF) in the severely impaired cluster was significantly lower than in those with preserved cognition at baseline and showed trend-level effects at 6- and 12-month follow-up. No significant differences in self-reported functional outcome (WHODAS 2.0) were present.
Conclusions
Current results demonstrate the existence of three distinct cognitive subgroups, corresponding with clinical outcome at baseline, 6- and 12-month follow-up. Importantly, the cognitively preserved subgroup was larger than the severely impaired group. Early identification of discrete cognitive profiles can offer valuable information about the clinical outcome but may not be relevant in predicting self-reported functional outcomes.