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Knowledge-infused learning directly confronts the opacity of current 'black-box' AI models by combining data-driven machine learning techniques with the structured insights of symbolic AI. This guidebook introduces the pioneering techniques of neurosymbolic AI, which blends statistical models with symbolic knowledge to make AI safer and user-explainable. This is critical in high-stakes AI applications in healthcare, law, finance, and crisis management. The book brings readers up to speed on advancements in statistical AI, including transformer models such as BERT and GPT, and provides a comprehensive overview of weakly supervised, distantly supervised, and unsupervised learning methods alongside their knowledge-enhanced variants. Other topics include active learning, zero-shot learning, and model fusion. Beyond theory, the book presents practical considerations and applications of neurosymbolic AI in conversational systems, mental health, crisis management systems, and social and behavioral sciences, making it a pragmatic reference for AI system designers in academia and industry.
We apply a continuation method to recently optimized stellarator equilibria with excellent quasi-axisymmetry to generate new equilibria with a wide range of rotational transform profiles. Using these equilibria, we investigate how the rotational transform affects fast-particle confinement, the maximum coil–plasma distance, the maximum growth rate in linear gyrokinetic ion-temperature gradient simulations and the ion heat flux in corresponding nonlinear simulations. We find values of two-term quasi-symmetry error comparable to or lower than those of the similar Landreman–Paul (Phys. Rev. Lett., vol. 128, 2022, 035001) configuration for values of the mean rotational transform $\bar {\iota }$ between $0.12$ and $0.75$. The fast-particle confinement improves with $\bar {\iota }$ until $\bar {\iota } = 0.73$, at which point the degradation in quasi-symmetry outweighs the benefits of further increasing $\bar {\iota }$. The required coil–plasma distance only varies by about ${\pm }10\,\%$ for the configurations under consideration, and is between $2.8$ and $3.3\ \mathrm {m}$ when the configuration is scaled up to reactor size (minor radius $a=1.7\ \mathrm {m}$ and volume-averaged magnetic field strength of $5.86\ \mathrm {T}$). The maximum growth rate from linear gyrokinetic simulations increases with $\bar {\iota }$, but also shifts towards higher $k_y$ values. The maximum linear growth rate is sensitive to the choice of flux tube at rational $\bar {\iota }$, but this can be compensated for by taking the maximum over several flux tubes. The corresponding ion heat fluxes from nonlinear simulations display a non-monotonic relation to $\bar {\iota }$. Sufficiently large positive shear is destabilizing. This is reflected in both linear growth rates and nonlinear heat fluxes.
We present a framework for analysing plasma flow in a rotating mirror. By making a series of physical assumptions, we reduce the magnetohydrodynamic (MHD) equations in a three-dimensional cylindrical system to a one-dimensional system in a shallow, cuboidal channel within a transverse magnetic field, similar to the Hartmann flow in ducts. We then solve the system both numerically and analytically for a range of values of the Hartmann number and calculate the dependence of the plasma flow speed on the thickness of the insulating end cap. We observe that the mean flow overshoots and decelerates before achieving a steady-state value, a phenomenon that the analytical model cannot capture. This overshoot is directly proportional to the thickness of the insulating end cap and the external electric field, with a weak dependence on the external magnetic field. Our simplified model can act as a benchmark for future simulations of the supersonic mirror device CMFX (centrifugal magnetic fusion experiment), which will employ more sophisticated physics and realistic magnetic field geometries.
GX is a code designed to solve the nonlinear gyrokinetic system for low-frequency turbulence in magnetized plasmas, particularly tokamaks and stellarators. In GX, our primary motivation and target is a fast gyrokinetic solver that can be used for fusion reactor design and optimization along with wide-ranging physics exploration. This has led to several code and algorithm design decisions, specifically chosen to prioritize time to solution. First, we have used a discretization algorithm that is pseudospectral in the entire phase space, including a Laguerre–Hermite pseudospectral formulation of velocity space, which allows for smooth interpolation between coarse gyrofluid-like resolutions and finer conventional gyrokinetic resolutions and efficient evaluation of a model collision operator. Additionally, we have built GX to natively target graphics processors (GPUs), which are among the fastest computational platforms available today. Finally, we have taken advantage of the reactor-relevant limit of small $\rho _*$ by using the radially local flux-tube approach. In this paper we present details about the gyrokinetic system and the numerical algorithms used in GX to solve the system. We then present several numerical benchmarks against established gyrokinetic codes in both tokamak and stellarator magnetic geometries to verify that GX correctly simulates gyrokinetic turbulence in the small $\rho _*$ limit. Moreover, we show that the convergence properties of the Laguerre–Hermite spectral velocity formulation are quite favourable for nonlinear problems of interest. Coupled with GPU acceleration, which we also investigate with scaling studies, this enables GX to be able to produce useful turbulence simulations in minutes on one (or a few) GPUs and higher fidelity results in a few hours using several GPUs. GX is open-source software that is ready for fusion reactor design studies.
We present new stellarator equilibria that have been optimized for reduced turbulent transport using nonlinear gyrokinetic simulations within the optimization loop. The optimization routine involves coupling the pseudo-spectral GPU-native gyrokinetic code GX with the stellarator equilibrium and optimization code DESC. Since using GX allows for fast nonlinear simulations, we directly optimize for reduced nonlinear heat fluxes. To handle the noisy heat flux traces returned by these simulations, we employ the simultaneous perturbation stochastic approximation (SPSA) method that only uses two objective function evaluations for a simple estimate of the gradient. We show several examples that optimize for both reduced heat fluxes and good quasi-symmetry as a proxy for low neoclassical transport. Finally, we run full transport simulations using the T3D stellarator transport code to evaluate the changes in the macroscopic profiles.
Quasisymmetry (QS), a hidden symmetry of the magnetic field strength, is known to support nested flux surfaces and provide superior particle confinement in stellarators. In this work, we study the ideal magnetohydrodynamic (MHD) equilibrium and stability of high-beta plasma in a large-aspect-ratio stellarator. In particular, we show that the lowest-order description of a near-axisymmetric equilibrium vastly simplifies the problem of three-dimensional quasisymmetric MHD equilibria, which can be reduced to a standard elliptic Grad–Shafranov equation for the flux function. We show that any large-aspect-ratio tokamak, deformed periodically in the vertical direction, is a stellarator with approximate volumetric QS. We discuss exact analytical solutions and numerical benchmarks. Finally, we discuss the ideal ballooning and interchange stability of some of our equilibrium configurations.
This study investigates the inheritance pattern of petalous and apetalous traits in yellow sarson (Brassica rapa var yellow sarson) and its significance for breeding efforts. Utilizing three crucial crosses between petalous (Pant Sweta, Pant Girija, YSH0401) and ‘apetalous’ parents, we observed the absence of apetalous plants in the F1 generation, indicating dominant inheritance of petalous plants. The F2 generation consistently displayed a 3:1 ratio of petalous to apetalous plants, confirming the dominance of the petalous trait. Chi-squared tests on each generation supported this conclusion. Backcrosses with petalous parents yielded no fruit, reinforcing the dominance of the petalous trait. Chi-squared tests on these backcrosses further confirmed the dominance inheritance pattern. Conversely, backcrosses with apetalous parents consistently exhibited a 1:1 ratio, highlighting the recessive nature of the apetalous trait. The study underscores the importance of understanding the inheritance pattern of petalous and apetalous traits in B. rapa var yellow sarson crop, as it has implications for breeding goals. Knowledge on trait inheritance can guide future breeding strategies, facilitating the transfer of the apetalous trait as needed. This study provides valuable insights for genetic investigations and breeding initiatives in B. rapa var yellow sarson.
Palmer amaranth (Amaranthus palmeri S. Watson) is the most problematic weed of cotton (Gossypium hirsutum L.)-cropping systems in the U.S. Southeast. Heavy reliance on herbicides has selected for resistance to multiple herbicide mechanisms of action. Effective management of this weed may require the integration of cultural practices that limit germination, establishment, and growth. Cover crops have been promoted as a cultural practice that targets these processes. We conducted a 2-yr study in Georgia, USA, to measure the effects of two annual cover crops (cereal rye [Secale cereale L.] and crimson clover [Trifolium incarnatum L.]), a perennial living mulch (‘Durana®’ white clover [Trifolium repens L.]), and a bare ground control on A. palmeri population dynamics. The study was conducted in the absence of herbicides. Growth stages were integrated into a basic demographic model to evaluate differences in population trajectories. Cereal rye and living mulch treatments suppressed weed seedling recruitment (seedlings seed−1) 19.2 and 13 times and 12 and 25 times more than the bare ground control, respectively. Low recruitment was correlated positively with low light transmission (photosynthetic active radiation: above canopy photosynthetically active radiation [PAR]/below cover crop PAR) at the soil surface. Low recruitment rates were also negatively correlated with high survival rates. Greater survival rates and reduced adult plant densities resulted in greater biomass (g plant−1) and fecundity (seeds plant−1) in cereal rye and living mulch treatments in both years. The annual rate of population change (seeds seed−1) was equivalent across all treatments in the first year but was greater in the living mulch treatment in the second year. Our results highlight the potential of annual cover crops and living mulches for suppressing A. palmeri seedling recruitment and would be valuable tools as part of an integrated weed management strategy.
We demonstrate a fast adjoint-based method to optimise tokamak and stellarator equilibria against a pressure-driven instability known as the infinite-$n$ ideal ballooning mode. We present three finite-$\beta$ (the ratio of thermal to magnetic pressure) equilibria: one tokamak equilibrium and two stellarator equilibria that are unstable against the ballooning mode. Using the self-adjoint property of ideal magnetohydrodynamics, we construct a technique to rapidly calculate the change in the eigenvalue, a measure of ideal ballooning instability. Using the SIMSOPT optimisation framework, we then implement our fast adjoint gradient-based optimiser to minimise the eigenvalue and find stable equilibria for each of the three originally unstable equilibria.
High-power-density tokamaks offer a potential solution to design cost-effective fusion devices. One way to achieve high power density is to operate at a high $\beta$ value (the ratio of thermal to magnetic pressure), i.e. $\beta \sim 1$. However, a $\beta \sim 1$ state may be unstable to various pressure- and current-driven instabilities or have unfavourable microstability properties. To explore these possibilities, we generate $\beta \sim 1$ equilibria and investigate their stability. First, we demonstrate the generation of high-$\beta$ equilibria with the computer code VMEC. We then analyse these equilibria to determine their stability against the infinite-$n$ ideal-ballooning mode. We follow that by engaging in a detailed microstability study using the GS2 code, beginning with assessments of electrostatic ion-temperature-gradient and trapped election mode instabilities. We observe interesting behaviour for the high-$\beta$ equilibria – stabilization of these modes through two distinct mechanisms – large negative local shear and reversal of electron precession drift. Finally, we perform electromagnetic gyrokinetic simulations and observe enhanced stability in the outer core of high-$\beta$ equilibria and absence of kinetic ballooning modes in the negative-triangularity, high-$\beta$ equilibria. The enhanced outer-core stability of high-$\beta$ equilibria is different from their lower-$\beta$ counterparts and offers an alternative, potentially favourable regime of tokamak operation.
High-resolution seismic data of the Ramasetu region revealed three subaerial unconformities S1, S2, and S3. S1 is the youngest subaerial unconformity, whereas S3 is the oldest. These subaerial unconformities have been determined based on the presence of channel-incision signatures. Identified buried channels originated in the Palk Strait and debouched in the Gulf of Mannar. Youngest buried channels became most active during MIS 3 (~60–29 ka) and were buried entirely at ~7.0 ka. The study suggests that the Palk Strait evolved as a large multi-centered freshwater reservoir during the last glacial period and remained a freshwater reservoir until seawater started encroaching the region at ~8.5 ka. The Ramasetu region was a potential habitat zone for foragers, with fresh and saline water ecosystems available at opposite banks. During the Microlithic and terminal Pleistocene, Homo sapiens needed to cross high-energy rivers using floaters/rafts in wet seasons of MIS 2 and 3. At the same time, they used a direct walkable land link in the extreme dry season of MIS 2. During the early to mid-Holocene, foragers required floaters/rafts or artificial structures (such as bandh/bridge) to cross shallow, low-energy estuarine patches of the Ramasetu. The Palk Strait region was not crossable without using boats/ships in the last ~7 ka except during minor sea-level falls.
The present study was carried out to estimate lamb survival (in days) from birth to weaning under survival analysis using data records from 2057 Harnali lambs born to 134 sires and 623 dams between the period from 2001 to 2020. The weaning age in resourced population was 90 days from birth. The hazard ratio in terms of risk of death up to weaning was determined using Cox proportional hazards model by subjecting some fixed factors such as year of birth, sex of lamb, birth weight (kg), dam’s weight at lambing (kg) and dam’s age at lambing (years). The overall survivability up to weaning among lambs was 91.59% and Kaplan–Meier estimates of mean survival time up to weaning was 85.77 days. Cox proportional hazard modelling revealed that the hazards of death up to weaning was higher in male lambs [1.66, 95% confidence interval (CI): 1.22–2.26] compared with female lambs [hazard ratio (HR) = 1.00]. It was also observed that the hazards of death (HR = 0.91, 95% CI: 0.88–0.94) had decreasing trends over years. For birth weight (kg), hazard rate was 0.34 (95% CI: 0.25–0.46), which indicated that the risk of pre-weaning mortality was lower as birth weight increases. The weight and age of dams at lambing did not influence the survival time of studied population. The present findings indicated that survival time increased in studied lambs over the years and it could be increased more by giving more emphasis on better litter weight and general health aspects at farm level.
The present study was undertaken to estimate the (co)variance components and genetic parameters of body weights recorded in Landlly piglets from birth to weaning at weekly intervals (w0 to w6). The data pertained to body weights of 2462 piglets, born to 91 sires and 159 dams across different generations during a 7-year period from 2014 to 2020. Five animal models (I–V), differentiated by inclusion or exclusion of maternal effects with or without covariance between maternal and direct genetic effects, were fitted on the data using the Bayesian algorithm. The analyses were implemented by Gibbs sampling in the BLUPF90 program and Markov chain Monte Carlo (MCMC) methodology was used to draw samples of posterior distribution pertaining to (co)variance components. Based on deviance information criteria (DIC), model V with inclusion of direct additive genetic, direct maternal genetic and permanent environmental effect of dam as random factors along with covariance between direct additive and maternal effects best fitted the data on pre-weaning traits (w0 to w5). Whereas, model I incorporating only the direct additive genetic effect best fitted the weaning weight (w6) data in Landlly piglets. The posterior mean estimates of direct heritability under the best models for W0 to W6 were 0.13, 0.19, 0.29, 0.13, 0.26, 0.32 and 0.46, respectively. Inclusion of the maternal component helped in better partitioning of variance for different body weights in Landlly piglets. The maternal heritability ranged from 0.06 to 0.14, while the litter heritability ranged from 0.11 to 0.15 for pre-weaning weights (W0 to W5) under the best-fit models. The influence of maternal environment was greater than maternal genetic effect from birth to 4th week of age. The results implied that variations in body weight of Landlly pigs were genetically controlled to moderate levels (especially w2 and w4) with contributions from direct additive and maternal genotype that can be exploited by designing efficient breeding programmes.
The COVID-19 pandemic’s need for life-saving treatments and a "warp speed" vaccine challenged the National Institutes of Health’s Clinical and Translational Science Award (CTSA) recipients to improve their methods and processes in conducting clinical research. While CTSA recipient, New Jersey Alliance for Clinical and Translational Science (NJ ACTS), responded to this call to action with significant clinical research milestones, a comprehensive understanding of regulatory metrics during the COVID-19 pandemic is uncertain. The objective of this research is to identify, compare, and contrast metrics that illustrate the effectiveness of NJ ACTS’s research mobilization efforts during COVID-19.
Methods:
Data were collected from the Institutional Review Board (IRB), the Clinical Research Units (CRUs), and the Office of Research and Sponsored Programs (ORSP). IRB data detailed the volume and types of protocols approved and turnaround time (TAT) for approval in 2020 vs. 2019. CRU data examined study metrics of adult and pediatric clinical trials across 2018-2020. ORSP data documented awards received in 2019 and 2020
Results:
Analysis revealed a 95% increase in IRB-approved studies in 2020, with a significant decrease in TAT for COVID-19 studies. All CRUs observed a median 5.2-fold increase in the enrollment of adult and pediatric participants for COVID-19-related research. Study income was 106% and 196% greater than 2019 and 2018, respectively, with more than half funded through federal sponsors and 89% for COVID-19 trials. ORSP data revealed that 9% of awards and 26% of 2020 funding were COVID-19 studies.
Conclusion:
This study demonstrates that NJACTS effectively responded to challenges posed by the pandemic
The objective of the current study was to estimate the genetic parameters for ewe productivity traits of Harnali sheep by examining non-genetic effects. The data records of 440 animals born to 85 sires and 259 dams were collected with respect to various traits such as litter size at birth (LSB), litter weight at birth (LWB), litter size at weaning (LSW), litter weight at weaning (LWW) and age at first lambing (AFL) for the period of 2001 to 2020. Genetic parameters were estimated by fitting a series of animal models using an average information restricted maximum likelihood (REML) algorithm in WOMBAT software. Least-squares analysis revealed significant (P < 0.05) influences of period of lambing, age and weight of ewe at lambing on the studied traits. These results indicated that heavier ewes had significantly higher (P < 0.05) values of litter weight traits than their counterparts. On the basis of likelihood ratio test, the estimates of direct heritability under best model for AFL, LSB, LWB, LSW and LWW were 0.06, 0.18, 0.09, 0.07 and 0.16, respectively. Maternal permanent environment effect made a significant contribution to the LSB trait (0.20). The genetic correlation between litter size and LWW was negative, while the remaining correlations were positive. The present results suggest that selection based on ewe productivity traits will result in low genetic progress and therefore the management role is more important for better gains.
In this paper, a novel statistical application of large deviation principle (LDP) to the robot trajectory tracking problem is presented. The exit probability of the trajectory from stability zone is evaluated, in the presence of small-amplitude Gaussian and Poisson noise. Afterward, the limit of the partition function for the average tracking error energy is derived by solving a fourth-order system of Euler–Lagrange equations. Stability and computational complexity of the proposed approach is investigated to show the superiority over the Lyapunov method. Finally, the proposed algorithm is validated by Monte Carlo simulations and on the commercially available Omni bundleTM robot.
To evaluate the utility of pre-operative transtympanic electrically evoked auditory brainstem responses and post-operative neural response telemetry in auditory neuropathy spectrum disorder patients.
Methods
Four auditory neuropathy spectrum disorder patients who had undergone cochlear implantation and used it for more than one year were studied. All four patients underwent pre-operative transtympanic electrically evoked auditory brainstem response testing, intra-operative and post-operative (at 3, 6 and 12 months after switch-on) neural response telemetry, and out-patient cochlear implant electrically evoked auditory brainstem response testing (at 12 months).
Results
Patients with better waveforms on transtympanic electrically evoked auditory brainstem response testing showed superior performance after one year of implant use. Neural response telemetry and electrically evoked auditory brainstem response measures improved in all patients.
Conclusion
Inferences related to cochlear implantation outcomes can be based on the waveform of transtympanic electrically evoked auditory brainstem responses. Robust transtympanic electrically evoked auditory brainstem responses suggest better performance. Improvements in electrically evoked auditory brainstem responses and neural response telemetry over time indicate that electrical stimulation is favourable in auditory neuropathy spectrum disorder patients. These measures provide an objective way to monitor changes and progress in auditory pathways following cochlear implantation.
The occurrence of retained ear mould impression material is rare and can lead to complications. The current case report describes one such complication, where the silicone impression material used to take the impression of the ear canal flowed into the middle ear through the pre-existing tympanic membrane perforation. Five days later, the patient presented with worsened hearing and blood-tinged discharge from the ear. Ear microscopy revealed a greenish foreign body in the middle ear.
Case report
The foreign body was removed by tympanotomy and the perforation repaired using a temporalis fascia graft. A hearing aid was prescribed after ensuring that the perforation had healed.
Conclusion
It is essential that the audiologist perform a basic otological examination before prescribing a hearing aid and preparing an ear mould. A clinical approach algorithm for audiologists, for prior to taking an impression, is suggested.