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The third edition of this essential introductory text has been fully updated in light of the genomics revolution. Providing authoritative and engaging coverage for students and professionals of conservation genetics and genomics, conservation biology, and wildlife biology, the authors explain the underpinning mathematics clearly and accessibly throughout. The critical link between theory and practice, so often obscured in applied genetics, is illuminated in each chapter through examples of diverse conservation issues (including strengthened plant coverage), the solutions needed, and detailed step-by-step guides on how genetic principles can be applied. Self-learning is further facilitated through problem sets with solutions, case studies, main point boxes, symbol and software lists, and approximately 600 engaging full-color photos and 300 graphics which relate genetic processes to species level conservation. Highlighting the interdependence between 'ecology' and 'genetics,' this text is educationally rich and visually stunning.
This book explores the nexus between ecological research and restoration through the long-term Mulligans Flat – Goorooyarroo Woodland Experiment. It synthesises 20 years of collaboration between researchers, government decision-makers, and conservation practitioners, offering valuable insights into the challenges, successes, and best practices of ecological restoration.Designed for researchers, policymakers, and restoration practitioners, this book is an essential guide to establishing long-term restoration projects with multiple partner organisations. Challenges and successes are discussed throughout, with chapter summaries highlighting key takeaways, making it a practical resource for both practitioners and academics. A dedicated chapter on Synthesis for Ecological Teaching distils insights from the Recovering Threatened Species and Ecosystems course developed at The Australian National University, providing an invaluable case study for undergraduate, graduate, and professional education. The book concludes with reflections from land managers and a vision for future directions to guide to the integration of research and restoration for lasting ecological impact.
R is fast becoming ubiquitous in the environmental sciences to analyse data. This book introduces environmental modeling and R. It assumes no background in either coding or calculus. It offers real-world examples, fully described programs, and detailed exercises. Readers learn how to analyse large datasets, create beautiful images, thoughtfully utilize the benefits of AI, and use techniques like optimization and sensitivity analysis in their modelling of complex environmental systems. Using examples from a range of environmental topics – including ecology, conservation, and climate science - the book will interest readers from a broad range of environmental and conservation sciences. Most graduate programs in environmental science and sustainability use R because it is both open source and powerful. R is common in government and consulting work, so students that go on to more advanced environmental modelling courses and potentially careers in the environmental field will find a grounding in R very useful.
Aimed at practising biologists, especially graduate students and researchers in ecology, this revised and expanded 3rd edition continues to explore cause-effect relationships through a series of robust statistical methods. Every chapter has been updated, and two brand-new chapters cover statistical power, Akaike information criterion statistics and equivalent models, and piecewise structural equation modelling with implicit latent variables. A new R package (pwSEM) is included to assist with the latter. The book offers advanced coverage of essential topics, including d-separation tests and path analysis, and equips biologists with the tools needed to carry out analyses in the open-source R statistical environment. Writing in a conversational style that minimises technical jargon, Shipley offers an accessible text that assumes only a very basic knowledge of introductory statistics, incorporating real-world examples that allow readers to make connections between biological phenomena and the underlying statistical concepts.
Biodiversity monitoring is essential to inform the state of wildlife populations, and the impacts of environmental change, conservation intervention, and sustainable development policies and actions. We review the current state of bird monitoring across Africa using public questionnaires and semi-structured interviews. We received 87 questionnaire responses from 46 (of 54) countries and, additionally, 24 in-depth interviews were carried out. Multiple data collection methods were reported with total counts of individuals being most frequent, but all-species surveys, essential for quantifying ecosystem health, were restricted to bird atlases and Common Bird Monitoring (CBM) projects in Kenya, Uganda, and Botswana. Data collection relied largely on volunteers, but their motivation, recruitment, training, and retention is a continuing challenge. The most sustainable programmes were driven by clear policy objectives (e.g. waterbird monitoring under the Ramsar Convention or the Convention on the Conservation of Migratory Species), monitoring of individual groups (e.g. raptors, vultures, bustards), specific threatened species, and where clear national priorities had been set within government agencies. Use of monitoring data by governments in country biodiversity reports or National Biodiversity Species Action Plans (NBSAPs) varied widely and, for many countries, simply did not exist. A lack of skilled analysts and a comprehensive approach to data curation and ownership were identified as major limitations. A more strategic approach to funding and monitoring is needed, whereby smaller funders collaborate to reduce costs associated with applying for small amounts of money, and bird (and biodiversity) monitoring is explicitly integrated with sustainable development goals to exploit broader funding streams.
Green Peafowl Pavo muticus, a dry forest specialist, has experienced declines across its range in mainland South-East Asia due to habitat degradation, habitat loss, and hunting. In Thailand, the species’ remaining habitats have been grouped into four strongholds where long-term viable populations are thought to persist. For two of these strongholds, extensive population estimates are available, but for the other two (north-western and eastern Thailand), only a single site-based estimate currently exists. To address the gap, additional density estimates were derived from distance sampling in OpLuang National Park (north-western stronghold) and the Phnom Dangrek Range (north-eastern stronghold). Remaining suitable habitats were identified using a Generalised Linear Model (GLM) and the threats these populations face were assessed. In the north-western stronghold, density was estimated at 0.51 calling birds/km2 in OpLuang National Park, with suitable habitat covering 7,197 km2 (2,657 km2 within protected areas) and deforestation totalling 1,374 km2 (963 km2 consecutive hotspots, 377 km2 sporadic hotspots, and 34 km2 new hotspots). In the north-eastern stronghold, density was estimated at 0.93 calling birds/km2 in three of six protected areas across the Phnom Dangrek Range, with suitable habitat covering 9,917 km2 (3,518 km2 within protected areas) and deforestation totalling 3,407 km2 (1,954 km2 consecutive hotspots, 1,142 km2 sporadic hotspots, 309 km2 new hotspots, and 2 km2 persistent hotspots). Our results confirm the importance of both strongholds for the long-term survival of the species. However, they also highlight the need for improved management to systematically monitor larger portions of suitable habitat, enhance population growth, and mitigate threats from deforestation, fire, and hunting by feral dogs.
In this paper, I investigate four sites connected to animist narratives in Northern Norway. The unrest associated with these sites is seen as being caused by human activity but carried out by disruptive forces. Sometimes the causes are known; sometimes they are unknown, but still connected to active agencies in these landscapes. The narratives relate to two types of forces that can make a place uneasy: chthonic forces and harmful deeds of humans against nature or other people. Implicit within these narrations and interpretations is an animistic worldview: places can and do remember. The places presented here are situated close to current or past Sámi settlements, suggesting that they are the result of animist and possibly shamanic practices and cosmologies. This reveals an ongoing concern with disruption of human/nature relations and attributed continued meaning through the Sámi narrative tradition. Sámi language originally had no word for nature. Luondo, the name used today, originally meant personality of humans, animals, or places, and illustrates my entry point into these phenomena.
Effective conservation of declining migratory species requires identifying habitats used during each stage of the annual cycle and the links between them. The Little Blue Heron Egretta caerulea, a long-legged, colonial-nesting, wading bird species that primarily forages in shallow-water wetlands, is declining throughout much of its range. A lack of understanding of its annual cycle movements prevents identifying when and where populations face limiting pressures, hindering conservation efforts. This study quantifies Little Blue Heron annual cycle movements, including space use at wintering and breeding sites, colony locations, migration distances, phenology, and site fidelity of herons from two important wintering sites on Florida’s Gulf Coast that differ in availability of fresh water. Little Blue Herons tagged with GPS transmitters (n = 30) showed a partial migration strategy; however, the ratio of migrants to residents was substantially different between the two study sites. Additionally, these birds established breeding colonies in both inland (n = 10) and coastal (n = 12) wetlands throughout the south-east USA and western Cuba (n = 2) and travelled a mean of 4.46 (SE = 0.87) km from their colony to forage. About 95% of individuals established colonies within freshwater wetland habitats, regardless of their wintering site, providing support that availability of fresh water during the breeding period is a key element of the habitat for this species. The results of this study suggest that management decisions aimed at minimising the threats to high-value wintering sites will benefit this species. The coastal systems examined supported wintering individuals for at least half of the full annual cycle. During this period, individuals maintained small home ranges (mean = 153.71, SE = 17.4 ha), did not make any significant within-season movements to other locations, and displayed strong inter-year site fidelity (0.49–0.85 BAI overlap), suggesting that these are areas that provide high quality habitats, justifying continued protection.
Survival is a key life history trait influenced by climate variability and resource availability in many bird species. Understanding the factors affecting survival in threatened species is critical for effective conservation management. However, we lack knowledge regarding survival rates and their annual variations for most threatened species. In this study, we use mark-recapture data collected in eastern Spain between 2011 and 2019 to estimate the annual adult survival of the Endangered Dupont’s Lark Chersophilus duponti, a steppe specialist passerine. We also aim to assess whether survival rates are linked to plant productivity, as a surrogate of resources available, and climate variability during the post-breeding (autumn) and winter periods. A total of 113 adults (89 males and 24 females) were ringed, which yielded 43 recaptures. The average adult survival rate over the nine-year period was slightly higher than previous estimates for Dupont’s Lark and other related species. Nonetheless, we observed substantial annual fluctuations in survival (ranging from 0.34 to 0.80), largely driven by winter climate conditions. Survival rates decreased during winters with a higher number of frost days (below 0ºC) and increased accumulated rainfall. These findings provide new insights into the population dynamics of the species and suggest that factors other than adult annual survival may be contributing to its declining status. Among those factors, a critical area for further research is to study and characterise the dispersal patterns and survival of juvenile birds, which remain largely unknown for this species.
Amphipod samples were collected from the rocky habitat of Arjyapalli beach in southern Odisha, India. The specimens were analysed for morphological characters. One interesting species was observed during the study and was identified as Stenothoe lowryi. The species was previously reported only from Malaysia. The present study confirms the distributional range extension of this species to Indian waters and details a few additional morphological characters.
The circumpolar Arctic region has undergone a major geopolitical transformation because of two external forces altering regional security: climate change and increasing great power competition, notably due to the Russian war against Ukraine. Underscored by the de facto suspension of pan-Arctic cooperation after Russia’s expanded invasion in February 2022, the circumpolar Arctic has fragmented into two distinct blocs: the Russian Federation and the Arctic 7 (A7) group of allied democracies. These blocs are informed not just by different security policies between Russia and its polar neighbours but by differing Arctic security public opinion among their populations. Drawing on an original dataset of 164 polls and surveys from all eight Arctic states taken between 2007 and 2024, we outline sub-regional patterns in security public opinion that demonstrate different attitudes between Russia and the A7 with respect to the two defining issues in Arctic regional security: climate change and great power competition between Russia, China, and USA. We find that climate change is universally considered the most serious security issue in the Arctic; Russia is widely seen as a threat to other Arctic states; China is not seen as a major threat nor as particularly relevant to Arctic security; and USA is strongly supported in all Arctic states but Russia. We also conclude that sub-regional analysis may offer clearer insights into Arctic security public opinion than pan-Arctic analyses.
The determinants of nest-site selection and nest success are important for conservation planning for endangered birds. Here we examine factors driving nest-site selection and success for the Mariana Crow Corvus kubaryi, also known as the Åga, across the entire range of the population, by comparing 370 nests that were found during surveys (2014–2021) against random points sampled from all forested areas on the island. Nest-sites were more likely to have high canopy cover than random points, while proximity to human infrastructure (e.g. roads, buildings) did not impact nest-site selection. None of our tested covariates impacted nest success, nor did the land-cover type in which the nests were found. Our results suggest that the Åga is able to nest successfully in close proximity to humans, and that nest success is not negatively affected by current land-use practices. Future research on the low nest success rate (23.9%) would be most fruitfully targeted towards local biotic stressors, such as nest predation or environmental factors, which may exacerbate the unknown inflammatory disease that afflicts many wild nestlings.
Scientific data on the influences of salinity shifts on the survival and behavioural attributes of marine animals is valuable to select potential coastal aquaculture candidates/commercial cultivation sites and to devise conservation strategies in the climate change scenario. This study establishes the survival ranges following gradual and abrupt salinity shifts for a high-value marine lobster species, Panulirus homarus. Lethal concentration limits differed between gradual and abrupt salinity shifts, with a broader tolerance observed under gradual shifts. There was 100% survival between 17 and 44‰ and between 26 and 41‰ following gradual and abrupt salinity shifts. As behavioural responses are critical in understanding the physiology and welfare status of animals, behavioural attributes, viz. antennule flicking per minute (AFM) and feed response time (FRT) were evaluated upon salinity shifts from the control (35‰). The sudden increase in AFM was the first visible reaction to the salinity shifts followed by a sustained decline beyond particular ranges in both gradual and abrupt shifts. FRT was significantly decreased beyond specific salinity ranges on gradual and abrupt salinity shifts and the animals became completely anorectic beyond 44–14‰, and beyond 44–23‰, respectively, on gradual and abrupt shifts. A better coping mechanism and a wider range of salinity tolerance were observed for gradual shifts than abrupt shifts.
National and continental-scale bird monitoring schemes, such as the Pan-European Common Bird Monitoring Scheme (PECBMS), are essential for tracking bird population trends across broad spatial scales. However, while these frameworks provide invaluable data for population monitoring, they may be less accurate in estimating species densities at small spatial scales, particularly for habitat-specialist species like the Red-backed Shrike Lanius collurio. This species is listed in Annex I of the EU Birds Directive, and its effective monitoring is a legal conservation obligation for EU Member States under the Natura 2000 framework. Ensuring accurate data on its population status is therefore critical for meeting international biodiversity targets. To evaluate this limitation, we compared density estimates from the Common Breeding Birds Survey (MPPL) with those obtained from intensive, targeted surveys across 53 study plots, each covering an area of 1 km², in eastern Poland. Although density estimates from MPPL and the targeted field study were correlated, a deeper analysis revealed that MPPL (2.1 individuals/km²) consistently underestimated densities recorded during targeted surveys (3.9 breeding pairs/km²). Using Generalised Linear Models (GLMs), we explored the habitat characteristics that may contribute to these discrepancies. Only two predictors, i.e. the proportion of buffer zones around arable fields and around mixed crops, were significantly associated with underestimation. In both cases, a higher share of buffer zones led to a greater difference between MPPL and targeted estimates, indicating that landscape structure influences detectability. Differences in survey timing between the two approaches, with MPPL visits conducted earlier in the breeding season, coupled with species-specific breeding behaviours (including peak activity later in the breeding season) may have influenced these differences. This study highlights that although bird surveys are an indispensable tool for analysing trends and comparing densities between surfaces over large spatial domains, their usefulness for studies at small spatial scales may be limited.
Understanding the causes and drivers of extinction is critical for mitigating future anthropogenic extinctions. This study explored the extinction process of the Crested Ibis Nipponia nippon in Japan, focusing on the last wild population on Sado Island. An integrated population model–population viability analysis (IPM-PVA) framework was applied to estimate demographic parameters and population dynamics using four historical data sources, i.e. population counts, records of dead or rescued individuals, reproductive data, and captures for captive breeding. The IPM estimated an average of 0.703 fledglings per breeding pair per season, with adult and juvenile survival rates of 0.870 and 0.730, respectively. Human disturbances were found to substantially reduce fecundity. PVA results indicated an extinction probability of 56.6% under observed historical conditions, which could have been reduced to 11.2% if human access to nesting forests had been restricted. The study identified low fecundity caused by human disturbance at nest-sites as a likely contributor to the species’ extinction. Despite the need for cautious interpretation due to data limitations, this study highlights the practical utility of the IPM-PVA framework in providing detailed insights into the extinction process.