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The third edition of this essential introductory text has been fully updated in light of the genomics revolution. Providing authoritative and engaging coverage for students and professionals of conservation genetics and genomics, conservation biology, and wildlife biology, the authors explain the underpinning mathematics clearly and accessibly throughout. The critical link between theory and practice, so often obscured in applied genetics, is illuminated in each chapter through examples of diverse conservation issues (including strengthened plant coverage), the solutions needed, and detailed step-by-step guides on how genetic principles can be applied. Self-learning is further facilitated through problem sets with solutions, case studies, main point boxes, symbol and software lists, and approximately 600 engaging full-color photos and 300 graphics which relate genetic processes to species level conservation. Highlighting the interdependence between 'ecology' and 'genetics,' this text is educationally rich and visually stunning.
This book explores the nexus between ecological research and restoration through the long-term Mulligans Flat – Goorooyarroo Woodland Experiment. It synthesises 20 years of collaboration between researchers, government decision-makers, and conservation practitioners, offering valuable insights into the challenges, successes, and best practices of ecological restoration.Designed for researchers, policymakers, and restoration practitioners, this book is an essential guide to establishing long-term restoration projects with multiple partner organisations. Challenges and successes are discussed throughout, with chapter summaries highlighting key takeaways, making it a practical resource for both practitioners and academics. A dedicated chapter on Synthesis for Ecological Teaching distils insights from the Recovering Threatened Species and Ecosystems course developed at The Australian National University, providing an invaluable case study for undergraduate, graduate, and professional education. The book concludes with reflections from land managers and a vision for future directions to guide to the integration of research and restoration for lasting ecological impact.
R is fast becoming ubiquitous in the environmental sciences to analyse data. This book introduces environmental modeling and R. It assumes no background in either coding or calculus. It offers real-world examples, fully described programs, and detailed exercises. Readers learn how to analyse large datasets, create beautiful images, thoughtfully utilize the benefits of AI, and use techniques like optimization and sensitivity analysis in their modelling of complex environmental systems. Using examples from a range of environmental topics – including ecology, conservation, and climate science - the book will interest readers from a broad range of environmental and conservation sciences. Most graduate programs in environmental science and sustainability use R because it is both open source and powerful. R is common in government and consulting work, so students that go on to more advanced environmental modelling courses and potentially careers in the environmental field will find a grounding in R very useful.
Aimed at practising biologists, especially graduate students and researchers in ecology, this revised and expanded 3rd edition continues to explore cause-effect relationships through a series of robust statistical methods. Every chapter has been updated, and two brand-new chapters cover statistical power, Akaike information criterion statistics and equivalent models, and piecewise structural equation modelling with implicit latent variables. A new R package (pwSEM) is included to assist with the latter. The book offers advanced coverage of essential topics, including d-separation tests and path analysis, and equips biologists with the tools needed to carry out analyses in the open-source R statistical environment. Writing in a conversational style that minimises technical jargon, Shipley offers an accessible text that assumes only a very basic knowledge of introductory statistics, incorporating real-world examples that allow readers to make connections between biological phenomena and the underlying statistical concepts.
The present study reports the first confirmed occurrence of the poecilostomatoid copepod Hemicyclops tanakai in the Vellar estuary, southeast coast of India. Previously known only from Japan and Korea, H. tanakai is a burrow-dwelling symbiotic copepod associated with decapod burrows in sediment-rich estuarine habitats. Zooplankton samples were collected using a 158 µm mesh net, and nauplii were cultured to adulthood under laboratory conditions. Adults were examined with standard taxonomic keys, and diagnostic features such as appendage segmentation and genital somite structure validated their identity with the original description. The Indian population displayed reversed sexual size dimorphism, with females larger than males, differing from earlier reports. Molecular confirmation was obtained by sequencing the 18S rDNA gene (GenBank Accession: PQ845087.1), which showed 99.53% similarity to reference H. tanakai sequences. Basic Local Alignment Search Tool (BLAST) analysis revealed close affinity with other Hemicyclops species and clausidiid relatives. Maximum likelihood phylogenetic analysis of partial 18S rDNA sequences placed the Vellar specimen within the H. tanakai clade with strong bootstrap support (99%), corroborating morphological identification. This record extends the known distribution of H. tanakai to the tropical Indian subcontinent and suggests possible range expansion via coastal currents or anthropogenic vectors such as ballast water. The finding adds to Indo-Pacific copepod biogeography and underscores the value of integrative taxonomy for reliable identification. It also highlights the need for continued biodiversity monitoring of Indian estuaries, which face mounting pressures from anthropogenic activity and climate change.
Identifying areas with a high risk of collision with wind turbines is crucial for the conservation of large soaring birds. However, studies often rely on different wind turbine data sources, and the effect of this heterogeneity on collision risk estimation remains poorly understood. To address this gap, we combined GPS and accelerometer data from six Griffon Vultures Gyps fulvus tracked in Sardinia (Italy) with three wind turbine data sets differing in accuracy and completeness. We estimated the vultures’ foraging grounds and calculated collision risk using each data set, including one based on aerial imagery (unbiased), one from OpenStreetMap (OSM), and a third from published literature. Results showed that turbines mapped from aerial imagery overlapped with 18.7% of foraging areas, compared with 8.7% using OSM and 15.9% using the third data set. Projections including planned wind farms indicated that 31.4% of current foraging grounds will become at risk. These findings demonstrate that wind turbine data sources significantly influence estimates of collision risk. The need for reliable, accessible, and regularly updated turbine maps to support effective conservation planning, guide mitigation actions such as selective shutdowns, and monitor cumulative impacts over time are highlighted.
A 23-foot cutter lies adjacent to the wreck of HMS Terror (Franklin Expedition, 1845–1848). Historical accounts of the 28-foot boat found in 1859 at site NgLj-3 in Erebus Bay (“Boat Place”) describe extensive field modification, including lightened upperworks, an altered rail arrangement, and a 9-inch weather-cloth supported by iron stanchions that also served as thowells. This paper uses reproducible image-processing methods to test whether the cutter preserves visible features consistent and convergent with elements of the NgLj-3 modification suite. Using still imagery, contrast-limited adaptive histogram equalisation, colour-index segmentation, and gradient-based seam detection, we assess three markers: anomalous rail height relative to the stemhead, preferential loss of upper planking, and a rail-mounted upright compatible with a stanchion. The imagery shows a pronounced mismatch between rail height and stemhead elevation relative to Admiralty cutter plans. A sub-gunwale void consistent with missing upperworks, which is notably similar to the strake replacement described, and a small upright feature of approximately the same order of magnitude as the reported weather-cloth height. These observations are suggestive rather than diagnostic, but taken together, they support a hypothesis that the Terror cutter may preserve traces of field modification comparable to those described at NgLj-3.
Marine conservation in the subtropical North-East Atlantic requires a precise understanding of the distribution of its endemic species, particularly within under-explored ecosystems. Avrainvillea canariensis, an endemic Macaronesian green macroalga, listed in the Canary Islands catalogue of protected species, has long been considered rare, occurring as solitary individuals associated with algal assemblages or seagrass beds. Here, we document a mesophotic habitat not previously reported from the Canary Islands, consisting of extensive and dense meadows formed exclusively by A. canariensis off the island of El Hierro. Our observations extend the species’ known distribution, establishing a new southernmost limit within the Macaronesian region. Algal meadows were detected using stereo Baited Remote Underwater Video Systems, occurred at 40–45 m depth, and reached a maximum density of up to 100 individuals/m2. These meadows may form complex habitats, as they seem to be actively utilized by a variety of marine fauna, including emblematic species and fish of economic importance. This study provides the first quantitative description of persistent populations of A. canariensis in the archipelago and highlights the need for systematic mapping of mesophotic zones to accurately determine the distribution and ecological roles of endemic habitat forming species.
Since 1859, attempts to resolve the question of the identity of a sailor from the 1845 Franklin expedition whose body was found that year on the south shore of King William Island have been complicated by contradictory evidence found with the skeleton. Documents found with the body implied the man was Harry Peglar, Captain of the Foretop, but the clothing indicated the man held a domestic rating, a steward or officer’s servant. This paper examines the question of the sailor’s identity through a review of the investigative framework of past attempts to ascertain the man’s identity. It then presents results of comparative DNA analyses conducted on the skeleton and on samples provided by descendants of Harry Peglar and six of the eight stewards. Comparison of DNA profiles obtained from the skeleton with those of descendants of the stewards yielded no matches, but comparison of the mtDNA profile obtained from the skeleton with a presumed descendant of Harry Peglar yielded a match with a genetic distance of 0. We conclude that the DNA and genealogical evidence confirm that the identity of the sailor whose skeleton was discovered in 1859 was that of Henry Peter (“Harry”) Peglar, Captain of the Foretop, HMS Terror.
The Pampas Meadowlark Leistes defilippii is a grassland specialist endemic to south-eastern South America, currently listed as ‘Vulnerable’ at the global level. However, available information on its distribution and population size is outdated or inaccurate, underestimating its risk of extinction. This study provides the most comprehensive reassessment of the species’ conservation status to date. Estimates of population size, Extent of Occurrence (EOO), and Area of Occupancy (AOO) are updated. The species’ status is evaluated using both the International Union for Conservation of Nature (IUCN) Red List and the Green Status frameworks. Results indicate an alarming decline in population size of over 80% across the last three generations. The current population is estimated to be between 1,460 and 2,057 individuals, with 90% concentrated in a single subpopulation in Argentina. The EOO has shrunk by 92% compared with previous estimates, and the AOO is now only 8% of the EOO. The species meets the thresholds for the IUCN ‘Critically Endangered’ category under criteria A and C. The Green Status assessment identifies the species as ‘Critically Depleted’, with a Species Recovery Score of 4% and a Conservation Gain of only 2%, highlighting its limited recovery potential even under current conservation scenarios. Our findings indicate that the Pampas Meadowlark is in critical condition and urgently requires an update in its status on the IUCN Red List. Immediate conservation actions are needed, including habitat protection and restoration, long-term monitoring, and the establishment of protected areas within its remaining range. This case exemplifies the need for up-to-date data in guiding effective conservation responses for threatened grassland species in South America. This reassessment underscores the urgent need to reassess the species’ global status and to invest in ambitious conservation strategies to prevent its extinction.
During 1864–1869, Charles Hall led an expedition seeking answers to what happened to the 1845 Northwest Passage Expedition of Sir John Franklin. Hall recovered relics from the expedition and their history from the Inuit. This analysis correlates Hall’s records with the relics now housed at the Smithsonian Institution and those that Hall gave to others. Forty-six of the 83 relics catalogued in Hall’s “Part of List Sir John Franklin Relics” notebook were identified. Many of these were correlated with a 1869 contemporary illustration appearing in Harper’s Weekly magazine. We learn that the collection likely represented what was of value to the Inuit as Hall traded for the majority of the relics. Among these, Hall gave away nearly all relics connected to individuals participating in the Franklin Expedition, except for some cutlery belonging to Sir John Franklin. Hall’s efforts provided the first evidence of materials scavenged from the expedition ships themselves. It remains unclear why Hall donated as many relics as he did to the Smithsonian for similar materials were used for fundraising in the past. This suggests he did not plan to return to the Arctic to seek the Franklin Expedition or he had additional relics not yet located.
Bird species occupying open habitats are subject to constant changes in habitat suitability and availability related to forest colonisation and the frequency of disturbance re-opening their habitats. The Laniidae family is made of open habitat specialists with five out of the six species of shrikes occurring in Europe rapidly declining. Here we quantified the probability of occupancy of the Iberian Grey Shrike Lanius meridionalis (Vulnerable), an endemic of Mediterranean open habitats, based on multiple-season monitoring data and allowing for imperfect detection. This scheme was carried out by a network of amateur ornithologists every other year from 2013 to 2023 in 213 ± 38 25-ha plots composed of a priori suitable scrubland on the edge of the species distribution in south-eastern France. The probability of detection averaged 0.52 ± 0.03 highlighting the relevance of a multiple-season design for this shy passerine species. The probability of occupancy averaged 0.35 ± 0.02 and only varied slightly between years (between 0.23 ± 0.04 and 0.41 ± 0.07) suggesting a stable population in scrubland over a decade. Shrike occupancy increased with increasing potential solar irradiation received at ground level, a proxy for arthropod prey abundance, and this effect was amplified in plots subject to recent fire. For a plot exposed to median solar irradiation, predicted shrike occupancy averaged 0.26 ± 0.07, 0.44 ± 0.08, and 0.52 ± 0.08 in plots subject to a fire 55 years, 24 years, and 11 years respectively before the survey, (i.e. 10th–50th–90th percentiles, respectively). We also found that increasing distance from human infrastructures increased shrike occupancy. Overall, our results revealed the potential factors responsible for habitat loss in a Vulnerable, open-habitat specialist bird. Secretive species like the Iberian Grey Shrike would benefit from natural habitats kept free from scattered human infrastructures and where natural processes like fire are maintained.
The Bermudan Archipelago supports a high-latitude subtropical coral reef ecosystem ∼1500 km from the nearest major reef system in the Tropical Western Atlantic (TWA) and Greater Caribbean. Although isolated, Bermuda has low rates of marine endemism due to regular long-distance dispersal from the TWA via the Gulf Stream Current. Nevertheless, Bermuda’s coral reef biodiversity is a reduced subset of that in the Greater Caribbean, indicating that its isolation does limit some species from dispersing or establishing persistent populations. The Alpheus armatus Rathbun, 1901 species complex is a clade of five pistol snapping shrimp species that form obligate symbioses with sea anemones from the TWA and Greater Caribbean. Although their host anemones are abundant, no members of this complex are known from Bermuda. We provide the first report of the A. armatus species complex from Bermudan coral reefs. Using molecular approaches, we identified our observed individual as Alpheus immaculatus Knowlton and Keller, 1983. Phylogenetic and species delimitation analyses indicate that our A. immaculatus sample from Bermuda does not represent a cryptic lineage nor genetically differentiated population. Instead, we interpret this species to have arrived recently as a chance long-distance dispersal event. No other A. immaculatus individuals were observed, suggesting this species has not been able to establish a long-term population in Bermuda.
Many species of hermit crabs, such as Calcinus and Clibanarius spp., live on rocky shores in tropical and warm temperate regions. During low tide, some of these species climb out of tidal pools onto exposed rock surfaces with their shell-aperture directed upwards. However, the adaptive significance of the ‘air-exposure (AE) behaviour’ was only previously investigated in several Clibanarius species; this behaviour is hypothesised to prevent competition for shells in tide pools during low tide. Considering the lack of knowledge of Calcinus species, understanding their significance is necessary to elucidate the ecological or evolutionary and general adaptive significance of AE behaviour in hermit crabs. The AE behaviour of Ca. laevimanus, which is the dominant species in sub-tropical and tropical rocky shores, was investigated on the rocky shores of Naze, Amami, Kagoshima, Japan. The generalised linear model indicated a significant positive effect of the gastropod shell length on the occurrences of this AE behaviour. Therefore, the current result indicates that individuals with larger gastropod shells, which offer them the potential to grow to larger sizes, more frequently engage in AE behaviour during low tides. The present result supports the previous hypothesis but suggests that external factor (i.e. shell size)-dependent AE behaviour has evolved in Calcinus species, which differs from the internal factor (i.e. body size or sex)-dependent AE behaviour in Clibanarius species.