Zoonotic parasites are a growing concern in regions where humans, domestic animals and wildlife live in close proximity. Understanding parasite communities overlap across hosts is essential for understanding transmission risks. In this study, we used sedimentation technique followed by microscopy, and molecular techniques for the identification of strongylid nematodes, Strongyloides, and protists in vervet monkeys (Chlorocebus pygerythrus, N = 75), household latrines (N = 25), dogs (Canis lupus familiaris, N = 25) and livestock (Ncows = 9, Ngoats = 7, Npigs = 9) at Lake Nabugabo, Uganda to compare parasite assemblages across hosts within the same habitat. We identified 33 unique parasite taxa with 18 in dogs, 14 in livestock and 10 each in vervets and latrine samples. There was a significant difference in the parasite infection rate between vervets (88%), latrines (24%), livestock (44%) and dogs (40%). Samples harboured at least 7 known genera of strongylid nematodes, with Ancylostoma, Murshidia and Oesophagostomum being the most prevalent. Protists diversity varied across hosts. Species-specific Cryptosporidium taxa occurred in dogs, goats (Capra aegagrus hircus) and pigs (Sus scrofa domesticus), and C. andersoni was detected in both dogs (4%) and cows (Bos taurus, 8%). Giardia intestinalis assemblage A was found in vervets (1.3%), dogs (16%) and latrine samples (12%). Enterocytozoon bieneusi occurred only in latrine samples, while Encephalitozoon sp. occurred only in vervets (4%). Our results show limited overlap between vervets and other hosts but highlight shared Giardia among animals and latrine samples, indicating key points of potential zoonotic transmission in this human-modified landscape.