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Chapter 4: Models of Active Ion Channels

Chapter 4: Models of Active Ion Channels

pp. 63-102

Authors

, University of Edinburgh, , University of Stirling, , Psymetrix Limited, , Norwegian University of Life Sciences (NMBU), , University of Edinburgh
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Extract

There are many types of active ion channel beyond the squid giant axon sodium and potassium voltage-gated ion channels studied in , including channels gated by ligands such as calcium. This chapter presents methods for modelling the kinetics of any voltage-gated or ligand-gated ion channel. The formulation used by Hodgkin and Huxley of independent gating particles can be extended to describe many types of ion channel. This formulation is the foundation for thermodynamic models, which provide functional forms for the rate coefficients derived from basic physical principles. To improve on the fits to data offered by models with independent gating particles, the more flexible Markov models are introduced. When and how to interpret kinetic schemes probabilistically to model the stochastic behaviour of single ion channels will be considered. Experimental techniques for characterising channels are outlined, and an overview of the biophysics of channels relevant to modelling channels is given.

Keywords

  • ion channel classification
  • ion channel structure and function
  • experimental techniques
  • gating particle models
  • thermodynamic models
  • Markov models
  • stochastic single-channel models
  • transition state theory

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